Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq516 244 1e-59 seq449 89.7 6e-13 >seq516 Length=1641395 Score = 244 bits (270), Expect = 1e-59 Identities = 1182/1848 (64%), Gaps = 55/1848 (3%) Strand=Plus/Plus Query 105558 TGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTCTTGAGTC 105617 ||||||| || ||| || |||| || ||| || |||||||| || ||||| || | Sbjct 1415275 TGAACTGGATAGGGGCAGCAGCCGCCTGAGTTCGCAGGTAGTACATGCCTGTCTTCAGGC 1415334 Query 105618 CTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATGA 105677 | | ||||| || | ||||| | || |||| ||| || || | |||| Sbjct 1415335 CGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTGCCCATGGTCGGGTCCTTCATGT 1415394 Query 105678 AAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAAT 105735 || || | ||| |||| |||| |||||| |||||| | ||| ||||| | || Sbjct 1415395 GAATGTTGAGGGACTGCGACT--GGTCGATGAAGGCACCACGGTCTGCGGCCATCTGAA- 1415451 Query 105736 GACATCCTTCATCTT---GATTTCCCACACTGTGCGGTAGAGATTCTTGATATCATCTGG 105792 || | || || ||||||||| || || ||| ||| ||| | || | || Sbjct 1415452 --CAACGGTCCGCTGAGAGATTTCCCAGACGGTCTTGTACAGAGCCTTCACCTCGGCCGG 1415509 Query 105793 GATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCATGAGATCCTTCATATCCTT 105852 ||| | | ||| || |||| ||||| | | || || | | |||||| | | Sbjct 1415510 GATGTTCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATC 1415569 Query 105853 GGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTC 105912 ||||| || || |||| ||||| |||| || |||||| | | ||||| Sbjct 1415570 AGACCACAGGCCCATCTCGACCAGATCCTTGAGAAGCCAGGGGTTGACGACCTGGAACTC 1415629 Query 105913 TCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATT 105972 || || || | | | | |||||||| | ||||| ||||| ||||| ||||| | Sbjct 1415630 GCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTA 1415689 Query 105973 ACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAG 106032 |||| ||| || | |||| ||| || ||||| || || | | |||||||| || | Sbjct 1415690 GCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTAC 1415749 Query 106033 ACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA---GTTGAGCTTGGTTTC 106089 ||| | | | |||| | ||||| || |||||||| | || | | || ||| Sbjct 1415750 ACCGTGCTGCGTGATCTGCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGGAC--GGCTTC 1415807 Query 106090 ACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTC 106149 || | ||||||| ||| | || ||| | || | ||| | || |||||||| | | ||| Sbjct 1415808 AC-TCCCCACATGTCATACTGGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTC 1415866 Query 106150 ATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGG 106208 |||| ||| | | | |||| | ||| | || || | ||||| || |||| Sbjct 1415867 GTAGGTACCCTCCTCCTTGGCCAGCTGCACCGACATGGTC-AGAGCAGCGTGGTAGATGG 1415925 Query 106209 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA 106268 | || ||||| ||| | || || ||| || || || | | || ||| | Sbjct 1415926 TCTCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGACTCGAAGG-GCAGACGCAGA 1415984 Query 106269 A--AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 106326 || ||| |||| || |||||||| ||||| | || ||||| | ||| ||||| || Sbjct 1415985 GCCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTT 1416043 Query 106327 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || || || | ||| || || || ||||||| | ||| || || Sbjct 1416044 GCTGTTACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCG 1416103 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||| || ||| | ||||| || || | | || | ||| | |||| | | Sbjct 1416104 TACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTCGTA--TGC-ACTCTCGTTGTA 1416160 Query 106447 G---ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATC 106503 | ||| | || ||||||| || ||||| ||||||||||| ||| || | Sbjct 1416161 GTCGACAAATGCAGGCAGGGCGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGC 1416220 Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 |||||| | || || || |||| |||||| | || || || | ||||| || Sbjct 1416221 GCAGTACTCAATGATCTCAGTGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTG 1416280 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||||| |||| |||||| || |||||| | || | || ||||| ||||| Sbjct 1416281 GTTGCTCTTGCGGTTGGCGTGATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTG 1416340 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG--GCCCGTCC 106680 || || |||||| || | ||| | | | | | || | || ||| |||| | | Sbjct 1416341 TGCCTCGAGAATGGCATACCAGAGCTTTTGAGCCTTT----AGGGTCTTGCGGCCCTTGC 1416396 Query 106681 CTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGA 106738 | ||| ||||||||| || | ||| |||||||| || || | || ||||| || Sbjct 1416397 CCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCC-ATAGCAGTCGGCAAGG 1416455 Query 106739 CCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 106798 || || || || ||||| | || | ||| | ||| || || |||| ||||||| Sbjct 1416456 CCGGGGCACTCGTTGGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATG 1416515 Query 106799 AAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCT 106858 || || || |||||||| |||| |||||||| | ||| |||| || | || Sbjct 1416516 AAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCG 1416575 Query 106859 TGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACT 106918 ||||| || | || | |||||| | | ||| |||||||| ||||| ||||||| Sbjct 1416576 TGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATG 1416635 Query 106919 GCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 |||| | || | | | ||| | | || | || ||||| || ||| ||| || Sbjct 1416636 GCGAAGGCGCCGGGGCGCTTGTTGCC-ACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAA 1416694 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGAT 107032 || |||||||| || || | ||| | || ||||| || || ||| |||||| Sbjct 1416695 AACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC 1416754 Query 107033 TTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGC 107092 | | || | | |||| || ||| ||||| || |||||| ||||||||| Sbjct 1416755 --AGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATG 1416812 Query 107093 GCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGG 107152 |||||| | | ||||| | ||||| || | ||| ||||||||||| || ||| |||| Sbjct 1416813 GCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGG 1416872 Query 107153 AAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGA 107212 |||||| |||| || | || ||||| || ||||| || || || | ||||| Sbjct 1416873 AAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGG 1416932 Query 107213 ATGAACATACCTTG--GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCC 107270 ||| | | |||| |||||| || ||| ||||| | ||| |||| || |||| Sbjct 1416933 GTGA--AAAACTTGCTTGACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCC 1416990 Query 107271 CGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCAT 107330 | ||| |||| || |||||||| | ||||| |||||| | || || | || | Sbjct 1416991 CCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGT 1417050 Query 107331 CGAGCCGTTGA--AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | ||| |||| || || | |||||||||| |||| |||||||| Sbjct 1417051 CCAGC--TTGAGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTA 1417096 >seq449 Length=641369 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || || || ||||| || || ||||| || || ||||||||||| Sbjct 272118 GTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGACC 272177 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || | ||| | ||| |||||||||||||| || Sbjct 272178 GCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACGGC 272237 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||||| |||| || |||| ||| |||| Sbjct 272238 AGCAAAGGCAACTAGACGCTGGGCAAAGG 272266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976684883920