Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq380 136 9e-27
seq547 129 1e-24
seq487 111 3e-19
>seq380
Length=739652
Score = 136 bits (150), Expect = 9e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||| || || || || || || ||||| ||||| ||| ||||| | ||||| ||
Sbjct 523830 AACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTC 523771
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
| ||||||||| || |||||||| ||||| ||||| || || || || || ||||||||
Sbjct 523770 CAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTG 523711
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| ||||| ||||| || || || || | |||| ||||||
Sbjct 523710 AATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTT 523651
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || ||||| | ||||||
Sbjct 523650 GCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621
Score = 129 bits (142), Expect = 1e-24
Identities = 140/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | ||||||||||||||| || ||||| ||||| |||| || || | ||||| ||
Sbjct 523094 AACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTC 523035
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || ||||| || || || || ||||| ||||||||||| || ||||| ||
Sbjct 523034 GAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTG 522975
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || |||||| || || |||||||| || || || || || || | |||||
Sbjct 522974 GATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTT 522915
Query 195111 TCCTGT 195116
|| ||
Sbjct 522914 GCCGGT 522909
>seq547
Length=620828
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| |||| || || | || || |||
Sbjct 191379 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 191438
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| | || || ||||| || || ||||| || ||||| ||
Sbjct 191439 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 191498
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || || |||||||| ||| ||||| |||||||| | |||||
Sbjct 191499 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTA 191558
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 191559 CCCGTAAGGGTCTTCACGAAGATCTGCAT 191587
>seq487
Length=725459
Score = 111 bits (122), Expect = 3e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
|| || || ||||| |||| ||| || | || || ||||||||||| || ||||||||
Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| || || ||||| ||||||||||| || ||||| || || || |||||| || ||
Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| ||||| || || || |||||||| | ||||| || |||| || || |||||
Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 202619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109473667899986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |