Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq380 87.8 1e-12 seq487 84.2 1e-11 >seq380 Length=739652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| ||||| || | || |||| |||| ||| || || ||||| Sbjct 523812 TTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAA 523753 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||||||||| | || | ||||||||||| |||||| || ||| Sbjct 523752 GATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCACGTT 523693 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | ||| || || | || || || || || ||||||||||| || Sbjct 523692 GTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGAC 523633 Query 34970 AAAGATCTGCATA 34982 ||||| |||||| Sbjct 523632 GAAGATTTGCATA 523620 >seq487 Length=725459 Score = 84.2 bits (92), Expect = 1e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| |||||| | || | || || ||||| || ||||| || || Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | || |||||||| | || | ||||||||||| ||||| ||||| | Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAA 34972 |||| ||| || ||| || || | ||| ||||| || ||||| || |||||||| || Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 202619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631392288624