Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq380 89.7 4e-13 >seq380 Length=739652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||||||||| || ||||| ||| || ||||| |||||||| || | | | ||| | Sbjct 523379 CGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCA 523320 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | ||||| || || || ||||| ||||| || || | ||||| |||||||||| Sbjct 523319 TCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGAATGCCCTCCTTG 523260 Query 48672 TC 48673 || Sbjct 523259 TC 523258 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || ||| | || | || |||||||||||||| ||||| Sbjct 523811 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAG 523752 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || || || || | ||| | ||||||||||| |||||| || || Sbjct 523751 ATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTG 523692 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||||| ||| ||||||| ||||||||| || || || | ||| || || Sbjct 523691 TCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACG 523632 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 523631 AAGATTTGCAT 523621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || || ||| | ||| | || ||||| ||||| ||||| || Sbjct 523583 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAG 523524 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| |||||| || || | ||||| |||||||| || |||||| || ||| Sbjct 523523 ATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTGACATTG 523464 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| | ||| ||||| | || || || || || || | || || || Sbjct 523463 TCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACG 523404 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 523403 AAAATCTGCAT 523393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935009386234