Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq516 242 7e-59 seq449 129 1e-24 >seq516 Length=1641395 Score = 242 bits (268), Expect = 7e-59 Identities = 1193/1875 (64%), Gaps = 74/1875 (4%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || ||||||| |||| || || || ||||||||||| ||||| Sbjct 1415271 ACAGTGAACTGGATAGGGGCAGCAGCCGCCTGAGTTCGCAGGTAGTACATGCCTGTCTTC 1415330 Query 212613 AGGCC---CTTGCCCCAGCCGTGCATGTGCATTGCTG-TGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| ||| ||| | |||||| |||| ||| |||| | || | Sbjct 1415331 AGGCCGAGCTT---CCAACCGGCGAAGTGCAT-GCTGGTGA---TCTTGCCC---ATGGT 1415380 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 | |||| | || || || | ||| |||||||| |||||| ||||| | | Sbjct 1415381 CGGGTCCT--TCATG-------TGAATGTTGAGGGACTGCGACTGGTCGATGAAGGCACC 1415431 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||| |||||||| | | | | ||| |||| ||||| ||||||||| | | Sbjct 1415432 ACGGTCTGCGGCCATCTGAACAACGGTCCGCTGAGAGATTTCCCAGACGGTCTTGTACAG 1415491 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGT---ATGGT 212845 | || | || | |||| | ||||||||||| ||||| || | | ||| | Sbjct 1415492 AGCCTTCACCTCGGCCGGGATGTTCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGAT 1415551 Query 212846 CAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTG 212905 | | | |||| | || ||| |||||| | |||| ||||| || Sbjct 1415552 ACGGTTCTT---CATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAGAAGCCA 1415608 Query 212906 AGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTA 212965 |||||||| | |||||| || || | || || | | |||||| | ||| || ||||| Sbjct 1415609 GGGGTTGACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTA 1415668 Query 212966 GGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC 213025 || |||| || ||| |||| ||||| ||||| | |||||||| || |||||||| || Sbjct 1415669 CGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGC 1415728 Query 213026 CACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTC 213085 || || |||||||| | || ||||||| ||| | | ||| ||||||| Sbjct 1415729 AACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTCCTTCAGCGAGTCCCAGTC 1415788 Query 213086 CCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTT 213145 |||| | | ||| | |||||| |||||||||| |||| | ||| || Sbjct 1415789 CCATAAGTCGGACGG---------CTTCACTCCCCACATGTCATACTGGAGCTCGCCCTT 1415839 Query 213146 GCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAG-G 213204 | | || |||| |||||| ||||| || | |||||||||||||| ||| | Sbjct 1415840 GGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCT-GCACCG 1415898 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 || ||| ||||||| ||||||||| || || |||| | || || | |||| Sbjct 1415899 ACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCCT 1415958 Query 213265 CTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGA 213324 | |||||| |||||||| || ||| ||||||| || || ||||| || | Sbjct 1415959 CAGGGGACTCGAAGGGCAGACGCAGAGCCAAGAAAGCATCAGCAAGACCTTGGACACCAA 1416018 Query 213325 TGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTG 213383 |||||| || | ||| | || ||| || |||| |||| | ||||| |||| Sbjct 1416019 GGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGC-CTCCGGAACAGGGTAGTGGTTG 1416077 Query 213384 CAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA---CATGG-GC--CAGG 213437 || |||||| |||| |||||||| | || | |||| ||||| || | || Sbjct 1416078 ACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTCATGGAGCTTCTGG 1416137 Query 213438 TACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCC 213497 | |||| || || | | || | ||||| |||||||||||| |||| Sbjct 1416138 AAGTCGTA--TGCACTCT----CGTTGTAGTCGACAAATGCAGGCAGGGCGAGCGAGGCC 1416191 Query 213498 AGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 | ||||||||| || ||||| | || | |||||| |||||||| |||||||| ||| Sbjct 1416192 AAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCACAGATTG 1416251 Query 213558 CTGCAT--CGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 | || |||||||| || ||||||| ||||| ||| |||||| |||||| | Sbjct 1416252 --GAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGATCCTTAT 1416309 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC--TCCAGAGGTA 213673 | |||||| | ||| || ||||| ||| | | | || | |||| |||||| | Sbjct 1416310 AAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAA--TGGCATACCAGAGCTT 1416367 Query 213674 CCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGC-CTCGTACTGTTCGTAGAGCT 213732 ||||| | | || | || | | | | || |||||||| || || | Sbjct 1416368 TTGAGCCTTTA----GGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAAGG 1416423 Query 213733 CGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGC 213792 | | || || | ||| || | | || || || || |||||||||||| Sbjct 1416424 CCTCAAACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCG 1416483 Query 213793 TCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGA 213852 |||| || || | | | || |||| |||||| || || || | ||| || || || Sbjct 1416484 TCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGA 1416543 Query 213853 ACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAA 213912 | || || | || | ||| || || ||| ||||| ||||| | || || | Sbjct 1416544 AGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGA 1416603 Query 213913 AGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCCTCTTGCCGC 213969 | | || |||||||| ||||| | |||||||| |||||||| | || | ||||| | Sbjct 1416604 AAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCAC 1416663 Query 213970 CCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGG 214029 ||||||| || | || ||||||| | || || | ||| | | ||||||| Sbjct 1416664 CCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGG 1416723 Query 214030 ACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCC 214089 | || ||||| || || || |||||||| | || | | | | | | | | Sbjct 1416724 AGGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGC 1416783 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGG 214149 | ||||| || || ||| ||||||||||| || | | | ||| || |||||| Sbjct 1416784 CAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTT 1416843 Query 214150 CCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGC 214209 | ||| ||| || | | || | | |||||| || || || | | || | | Sbjct 1416844 CGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTAC 1416903 Query 214210 CAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGG 214269 | | |||||| || ||||| ||| ||| | | ||||||| | || | | |||||| Sbjct 1416904 CGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGG 1416963 Query 214270 TCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCATGT 214329 |||| | ||| | || || | ||| | ||| | ||| | ||||| Sbjct 1416964 TCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGT 1417023 Query 214330 GCTGGGGCCTCTCTATGGGTCCTTTGGGGCC--CTTGAGCAGGTAGGAGCGCTCCAGAGT 214387 ||||||| ||||| | | ||| | || |||||| ||||| || | ||| || || Sbjct 1417024 GCTGGGG--TCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAGGTATGACCTCTCAAGGGT 1417081 Query 214388 CTTGAACCCAAAGTA 214402 |||||| |||||||| Sbjct 1417082 CTTGAAGCCAAAGTA 1417096 >seq449 Length=641369 Score = 129 bits (142), Expect = 1e-24 Identities = 333/504 (66%), Gaps = 9/504 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 271815 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTC 271874 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||||| | || || ||| | ||||| | ||||| Sbjct 271875 CATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACAAGCAG 271934 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||||||||| | ||| | | | ||||||||| | || | Sbjct 271935 ACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAGAGC 271994 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||| ||||| || | ||||||| ||| |||| || || || | | ||| | Sbjct 271995 GCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAATGTC 272054 Query 48079 CTTAACG--CGGGACTCT-GAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 || || | | | || | | | || ||| ||||| | | | | | |||||| Sbjct 272055 CTCAATGACCTGCTTGCTAGGGCGGTTCTTG---AGGTG---AGAAAACAAGAGGCAGGC 272108 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 ||||| |||| | || ||||| || ||| ||| |||| ||||| ||||| || Sbjct 272109 GAAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGG 272168 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||||| || | || || |||||||| || | ||||| | || |||||||| || Sbjct 272169 CATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACC 272228 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||| || || || || || || | || | || | | |||| ||| |||||||| Sbjct 272229 CTCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGGTGGACTTCTGGTCGGAGATCCA 272288 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTT 48339 || |||||||| |||||||| Sbjct 272289 CTTGAGAGCCCAGTCGGCCTTCTT 272312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931526302558720