Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq516 255 1e-62 seq449 131 3e-25 >seq516 Length=1641395 Score = 255 bits (282), Expect = 1e-62 Identities = 869/1337 (65%), Gaps = 63/1337 (5%) Strand=Plus/Plus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAA-GACTGCGTCAGGGC 221424 || ||||| |||||||||| ||| | | | |||| | ||| ||| ||||| || Sbjct 1415853 CCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCT-GCACCGACATGGTCAGAGC 1415911 Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGGAGAAGTGA 221483 |||||||||||||||||| |||||| | || || || || | ||||| || || || Sbjct 1415912 AGCGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGA-TCGCGAGCCTCAGGGGACTCGA 1415970 Query 221484 AGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 |||||| |||||| | ||||| | || || || || || || || | ||||| || Sbjct 1415971 AGGGCAGACGCAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGGCCGATAGGG 1416029 Query 221543 CTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCA 221600 | ||| | | ||||| | || || || || || || || |||||| || || | Sbjct 1416030 CGGTGACGCATGTTGCTGTTACGA--GCCTCCGGAACAGGGTAGTGGTTGACATCAATGA 1416087 Query 221601 GATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACA 221660 |||| ||||| | || || ||| |||| ||| || ||| | || | Sbjct 1416088 TCCTGTTCAGGTT--GCGT----AC---AACAACCTGGGTGGTCTCATGGAGCTT---CT 1416135 Query 221661 CCAACTCGC---CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCA 221717 || ||| | | |||| | | || ||||| || ||||| | ||||| Sbjct 1416136 GGAAGTCGTATGCACTCTCGTTGTAG---TCGACAAATGCAGGCAGGGCGAGCGAGGCCA 1416192 Query 221718 GGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGC 221777 ||| || || || |||||||| | |||| |||||||| || || || ||| Sbjct 1416193 AGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCACAGATTG- 1416251 Query 221778 TGCACTT--GATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | | | |||||| || |||| || || || |||||| ||||| ||||| || Sbjct 1416252 -GAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGTGATCCTTATA 1416310 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 ||||| || || |||||||| ||| ||| | ||||| | |||||| | | Sbjct 1416311 AAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTG 1416370 Query 221896 GGCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAG 221949 || | | ||| | |||| | | | |||| ||| |||||| || | Sbjct 1416371 AGCCTTTAGGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAAGGCCT---- 1416426 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 |||||| ||| || || ||| | ||||| || ||| | ||||||||| || Sbjct 1416427 -----CAAACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAG 1416481 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 |||| | || | || ||||||| ||||||||| || || ||||| || || | Sbjct 1416482 CGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAG 1416541 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 |||||||| | || || |||||| ||||| ||| || | |||||||| ||||| Sbjct 1416542 GAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTC 1416601 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 |||| || |||||||| ||||| ||||||| ||| | |||||||| ||||||||||| Sbjct 1416602 GAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCC 1416661 Query 222190 ACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTC 222245 |||||| || | | | | || | |||||| | ||||| | || | | | Sbjct 1416662 ACCCTGGTCGA----CGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACAC 1416717 Query 222246 CGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAG 222305 ||||||| || |||||||| ||||||| || || | | | | | Sbjct 1416718 CGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGT 1416777 Query 222306 ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGA 222365 |||||| || || || || || ||||||||||| || ||||||||||||| || Sbjct 1416778 TCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGA 1416837 Query 222366 TGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGG 222425 |||| || || ||||||||||| | || | || || ||||| |||| |||| | || Sbjct 1416838 TGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGG 1416897 Query 222426 TGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGAT 222485 || || |||||| ||||| |||||| |||||| || || | || ||||||| | Sbjct 1416898 GGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGT 1416957 Query 222486 CGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGT 222545 ||| ||||| | ||| | | | ||||||||| || | || | |||| Sbjct 1416958 TGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACACGCATGA 1417017 Query 222546 ACATGTACTGGGGCCTCTCCACAGGA----CCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| |||||| ||||| | || ||| | |||| ||| ||||| || | Sbjct 1417018 TCATGTGCTGGGGTCTCTCGGC--GATCTTCCCGTCCAGCT--TGAGGAGGTATGACCTC 1417073 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCGGCG 222661 || || |||||||| |||||||| | | | ||||| | | | | || | ||||| | Sbjct 1417074 TCAAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAGTCACGGTCATAGACAATGGCGGAG 1417133 Query 222662 TCCAGCTCCGACTTGTG 222678 || | |||| |||||| Sbjct 1417134 TCGAACTCCTCCTTGTG 1417150 Score = 111 bits (122), Expect = 3e-19 Identities = 325/494 (66%), Gaps = 24/494 (5%) Strand=Plus/Plus Query 220763 ACAGAAAACTGTACGGGAGCCACTGCAGCCTTGGTTCTCAGATAATACATGCCAGTTTTC 220822 |||| ||||| | || || | || |||| |||| ||| || |||||||| || ||| Sbjct 1415271 ACAGTGAACTGGATAGGGGCAGCAGCCGCCTGAGTTCGCAGGTAGTACATGCCTGTCTTC 1415330 Query 220823 AGTCCCCTCGACCAAGCGTGCATGTGCATCCTCGTGAGCTTCTTCATCTTGAGGTCTGGG 220882 || || | |||| || | |||||| || |||| ||| ||| |||| ||| Sbjct 1415331 AGGCCGAGCTTCCAACCGGCGAAGTGCATGCTGGTGATCTTGCCCAT-----GGTC-GGG 1415384 Query 220883 TCGTTTTCACACAAAAACAGATTGAGGGATTGACTCTGATCCACAAACGGTGCCCTGTCC 220942 || || || | |||||||| || ||| || | || | | | ||| Sbjct 1415385 TCCTT------CATGTGAATGTTGAGGGACTGCGACTGGTCGATGAAGGCACCACGGTCT 1415438 Query 220943 GCCGCCATGTCAATGA-GATCCTTCTGAGGCAGTTCGTAGGCCGTCTTGAAGACATCCTT 221001 || ||||| | || | | ||| ||||| | ||| || | |||||| | | | |||| Sbjct 1415439 GCGGCCATCTGAACAACGGTCCG-CTGAGAGATTTCCCAGACGGTCTTGTACAGAGCCTT 1415497 Query 221002 GAGCTCAGACGGGAACGACGCGATAGCTTGTACAGAGCCCTTGTTGACCAAAAGCTCGGT 221061 | ||| | ||||| || ||| || ||||| || || | | | | | |||| Sbjct 1415498 CACCTCGGCCGGGATGTTCGGGATGTTCTGAACAGAACCGTTCTCGGCGATGATA-CGGT 1415556 Query 221062 ACG-CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGA----CCATGTGCTTG 221116 | ||| | || | ||| || ||| |||| |||| |||||| ||| | | Sbjct 1415557 TCTTCATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAGAAGCCAGGGG---- 1415612 Query 221117 TTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGT 221176 || || || ||||| || || | || || | | |||||| | ||| || ||| ||||| Sbjct 1415613 TTGACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGT 1415672 Query 221177 TCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACC 221236 |||| || ||| |||| |||||||||||| | |||||||| || |||||||| || || Sbjct 1415673 TCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACA 1415732 Query 221237 AGCAGACTGTTGCG 221250 |||||||||||||| Sbjct 1415733 AGCAGACTGTTGCG 1415746 >seq449 Length=641369 Score = 131 bits (144), Expect = 3e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| | ||||||||| | ||||| | || |||| | |||| || || |||||| Sbjct 272300 TGGGCTCTCAAGTGGATCTCCGACCAGAAGTCCACCTTTGCCCAGCGTCTAGTTGCCTTT 272241 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 ||||| || ||||| ||||| || |||||| | || || ||||||||||||| ||| || Sbjct 272240 GCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTCGCTTCCATCTTCTGGCTGAAGAAG 272181 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| || || |||||||| ||| | |||||||||||| Sbjct 272180 CGCGGTCTCATGCCCGGTCTGACATTCTCTAACGAGCTTATCTCTCGTGACGAGGGTCTC 272121 Query 26014 CACAGAGATTTTGCCTGCCT 26033 |||| || || |||||||| Sbjct 272120 CACACCGACTTCGCCTGCCT 272101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928838321307520