Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq380 96.9 2e-14 >seq380 Length=739652 Score = 96.9 bits (106), Expect = 2e-14 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| | |||||| |||||||| || || ||| || || || || || ||| |||| Sbjct 523842 ACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTC-GCTCAGAG 523784 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || | ||||| |||||||| ||||||||||| || || || || || | Sbjct 523783 TGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATAC 523724 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||||||||||||||| || || ||||| || || | | | | | || Sbjct 523723 CCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCA 523664 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||||||||| ||||| ||||| Sbjct 523663 A-CGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTG 523624 Score = 87.8 bits (96), Expect = 1e-11 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| ||||| ||||| || || || || || || ||||| || ||||| Sbjct 523320 ATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGAATGCCCTCCTT 523261 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 ||| || ||||| ||||| || || ||||||| || | | | ||||||||| Sbjct 523260 GTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTACCT-CAAGGGTAA 523202 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || || |||||||| ||||| |||| Sbjct 523201 TGGTCTTGCCGGTGAGTGTCTTGACGA 523175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268155264672584