Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq516 217 2e-51 seq449 89.7 6e-13 >seq516 Length=1641395 Score = 217 bits (240), Expect = 2e-51 Identities = 948/1469 (65%), Gaps = 47/1469 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCT--TCAACGGCTCGATGGCATCCTCA 75203 |||||||| |||| |||||||||| | || || |||| ||| || || | || Sbjct 1417096 TACTTTGGCTTCAAGACCCTTGAGAGGTCATACCTCCTCAA--GCTGGACGGGAAGATCG 1417039 Query 75204 TGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTG 75263 || | || ||| ||||| ||||||| || || |||| ||| ||||| || ||| Sbjct 1417038 CCGAGAGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGGGACAACGTTG 1416979 Query 75264 ATTCTGTCTTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACC 75321 | ||| | ||||| ||| || |||||| |||| | | ||| ||||| | || Sbjct 1416978 AGCGCGTCATCGAGACCTACAACTTGATGTCAAGCAAGTTTT--TCACCCACGCCTCTCC 1416921 Query 75322 AACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAA 75381 || || ||||| || ||||| || | || |||| |||||||||| ||| || Sbjct 1416920 CACACTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCTTGTCGACAT 1416861 Query 75382 CAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAA 75441 ||||||||||| ||| | || ||||| | ||||| | | |||||| |||||||| Sbjct 1416860 GAAGGAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCATGATCTCAAA 1416801 Query 75442 GTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTC 75500 | |||||| || ||||| ||| || |||| | | || | | |||||| || Sbjct 1416800 GATGGCTGGCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACT--GGCTCGTACATC 1416743 Query 75501 G-GGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 75559 | || || ||||| || | ||| | || || |||||||| || || ||| ||| Sbjct 1416742 GCCGGCACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCAACAACACC 1416683 Query 75560 GCGCGCTATGTAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGA 75615 || ||||| || | | || | ||| ||| || || |||| |||| | || Sbjct 1416682 GCTCGCTACGTCGA-CCAGGGTGGCAACAAGCGCCCCGGCGCCTTCGCCATCTATCTCGA 1416624 Query 75616 ACCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGA 75675 || ||||| |||||| | | |||||| | || | || ||||| || | || || Sbjct 1416623 GCCCTGGCACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGA 1416564 Query 75676 GGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGT 75735 || ||| | |||||||| |||| |||||||| || || ||||||||| |||| Sbjct 1416563 GGTTCGTGCCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGT 1416504 Query 75736 TGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-G 75794 || || ||| | ||| | || | ||||| || || || || || ||||| | Sbjct 1416503 GGAAAAGAATGGCGAGTGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTG 1416444 Query 75795 CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGG-TAGAGC--CA 75851 | | || || |||||||| ||| | || ||||| || ||||| || || || Sbjct 1416443 CTAT-GGCGAAGAGTTTGAGGCCTTGTATGAGAAGTACGAGCGCGAGGGCAAGGGCCGCA 1416385 Query 75852 ATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 | ||| || || | | | | | ||| | || |||||| | ||||||| |||||| Sbjct 1416384 A---GACCCTA-AAGGCTCAAAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAGACT 1416329 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 || | || | |||||||| |||||| ||| ||||| ||||| ||||| | Sbjct 1416328 GGTAACCCGTTCATGCTTTATAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTC 1416269 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || ||| | || ||||| ||||| || || | |||||| | || ||| Sbjct 1416268 GGTACCATCCGCAATTCCAATCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGACGAG 1416209 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT---CAATGAAGAGACT 76087 ||||||||||| ||||| || ||||||| || | ||| | | | |||| | Sbjct 1416208 GTCGCTGTTTGCAACTTGGCCTCGCTCGCCCTGCCTGCATTTGTCGACTACAACGAGAGT 1416149 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 ||| | || | | || || ||||| | ||| || ||||| || || ||| Sbjct 1416148 -GCA--TACGACTTCCAGAAGCTCCATGAGACCACCCAGGTTGTTGTACGCAACCTGAAC 1416092 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACAC 76207 | ||||||| || || || ||| | || || || || ||||| ||| Sbjct 1416091 AGGATCATTGATGTCAACCACTACCCTGTTCCGGAGGCTCGTAACAGCAACATGCGTCAC 1416032 Query 76208 AGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTACG 76265 | ||||| || | ||||| |||||||| || |||| ||| || | ||| || | Sbjct 1416031 CGCCCTATCGGCCTTGGTGTCCAAGGTCTTGCTGATG-CTTTCTTGGCTCTGCGTCTGC- 1415974 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | || || || ||| || || | ||| ||||| || ||||| || |||| Sbjct 1415973 CCTTCGAGTCCCCTGAGGCTCGCGATCTTAATAAAAAGATCTTCGAGACCATCTACCACG 1415914 Query 76326 CATCCCTGGAGGCGAGT-TGTG-AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | | ||| | || ||| | |||| | | | ||| |||| ||| | | || Sbjct 1415913 CTGCTCTG--ACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGTACCTACGAGTCTTACGA 1415856 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443 |||||| || ||| | || | ||| |||| ||| ||||||| | ||||| || | Sbjct 1415855 GGGTTCGCCTATCTCCAAGGGCGAGCTCCAGTATGACATGTGGGGA-GTGAAGCC--GTC 1415799 Query 76444 CAAC---TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAG 76500 | || | |||||||| || ||||| | |||| | || | ||| | || ||||| Sbjct 1415798 CGACTTATGGGACTGGGACTCGCTGAAGGAGCAGATCACGCAGCACGGTGTACGCAACAG 1415739 Query 76501 TCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 76560 ||| | | || || ||||| || ||| |||| | || ||| |||| | ||||| || Sbjct 1415738 TCTGCTTGTTGCCCCCATGCCTACTGCCAGCACCTCGCAGATCCTGGGCTACAATGAGTG 1415679 Query 76561 CTTTGAACCATACACAACAAACATCTACC 76589 ||| ||||| ||||| | |||||||||| Sbjct 1415678 CTTCGAACCGTACACCTCCAACATCTACC 1415650 >seq449 Length=641369 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 |||| ||| |||| || |||| ||||| || |||||||||||||| ||| | | Sbjct 272266 CCTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCT 272207 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 || | || | ||| |||||||||| ||||||||||| || || ||||| || | Sbjct 272206 TCGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTAACG 272147 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCAC 65217 | ||||| || || || |||||||||||| Sbjct 272146 AGCTTATCTCTCGTGACGAGGGTCTCCAC 272118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565438927040