Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq516 399 3e-106 seq547 176 6e-39 seq380 174 2e-38 seq384 100 4e-16 seq537 89.7 7e-13 >seq516 Length=1641395 Score = 399 bits (442), Expect = 3e-106 Identities = 793/1171 (68%), Gaps = 5/1171 (0%) Strand=Plus/Plus Query 195711 CAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTG 195770 |||| | ||||| ||||| ||||||| || || || || ||||| || |||||||| | Sbjct 518452 CAGTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCG 518511 Query 195771 CTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTG 195830 | ||||| ||||| ||| ||| | || ||||| || || || || || || |||| Sbjct 518512 GTCTCATTGCCGGTCTCAACGTCCTTCGTATCATCAACGAGCCCACCGCTGCCGCCATTG 518571 Query 195831 CTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTG 195890 | || ||||| |||||||| || | || || || | ||||| ||||| |||| Sbjct 518572 CCTACGGTCTCGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTG 518631 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 ||||||| || |||||||| || || | ||||| | ||||| ||||| || ||| | | Sbjct 518632 GTGGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTTAAGTCCA 518691 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTG 196009 | || ||||| || || | |||||||| || ||||| ||||| || || || | Sbjct 518692 CCGCCGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCG 518751 Query 196010 TCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGT 196069 || | |||||| || ||| | ||||| || | || | || || | ||||||||| Sbjct 518752 TC-AACGAGTTCAAGCGCAAGCACAAGAAGGACCTGTCCGCCAACGCTCGCGCTCTTCGT 518810 Query 196070 CGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATG 196129 || || | || || || || |||||||| || || || || ||| | || || || Sbjct 518811 CGTCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCTTCCGCCCAGACTTCC 518870 Query 196130 GTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGT 196189 | ||||| || || |||| || || ||||| ||||| || | || |||||||| || Sbjct 518871 ATCGAGATCGACTCCCTGTTCGAGGGTATTGATTTCTACACCTCCATCACCCGTGCTCGC 518930 Query 196190 TTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTT 196249 || || ||| | | || | || | || | || || || | || || Sbjct 518931 TTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATCCAGCCCGTCGACCGCGTCCTC 518990 Query 196250 CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACC 196309 | ||||| ||||| || ||||| |||| | || || |||||||| || || || ||| Sbjct 518991 AGCGACGCCAAGATCGACAAGTCCCAGGTCCACGAGATCGTCCTTGTCGGTGGTTCCACC 519050 Query 196310 CGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAA 196369 ||||| || || || || | |||| || |||||| || || ||||| Sbjct 519051 CGTATCCCCCGCATCCAGAAGCTCATTTCCGACTACTTCAACGGCAAGGAGCCCAACAAG 519110 Query 196370 ACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCA 196429 | |||||||| ||||| || ||||| || ||||| ||||| |||||||| || || || Sbjct 519111 TCCATCAACCCCGATGAGGCTGTTGCCTACGGTGCCGCCGTCCAGGCTGCCATCCTGTCC 519170 Query 196430 GGTG---TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCC 196486 |||| | ||| || | | | | || | ||||| || || ||||| || | || Sbjct 519171 GGTGACACTTCCAACAAGACCACCAACGAGATCCTGCTTCTCGACGTTGCCCCTCTGTCT 519230 Query 196487 CTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATT 196546 || ||| | || || || ||||| | ||||| || | || | ||||| || || Sbjct 519231 CTCGGTATCGAGACCGCTGGTGGCATGATGACCAAGCTCATCCCCCGCAACACCACCATC 519290 Query 196547 CCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATT 196606 || || |||||| | ||||| || || | ||||| || || || ||||| | || Sbjct 519291 CCCACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCCGACAACCAGCCTGGTGTCCTCATC 519350 Query 196607 CAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGAT 196666 || || || || || || ||| || | ||||| ||| | || || || | ||||| Sbjct 519351 CAGGTCTACGAGGGTGAGCGCCAGCGCACCAAGGACAACAACCTTCTCGGCAAGTTCGAG 519410 Query 196667 TTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATA 196726 | || || || || | || ||| | |||||||| ||||| | || ||||||| | Sbjct 519411 CTTACCGGTATCCCCCCCGCTCCCCGCGGTGTTCCCCAGATCGAGGTCACCTTCGATCTT 519470 Query 196727 GACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAG 196786 || || || || || | |||||| | || | || |||| | ||||| || | ||| Sbjct 519471 GATGCCAACGGTATCATGAACGTCTCCGCCGTTGAGAAGGGCACCGGCAAGTCCAACAAG 519530 Query 196787 ATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAA 196846 ||||| |||||||| |||||||| || ||||| |||||||| || || || ||| || Sbjct 519531 ATTGTCATTACCAACGACAAGGGCCGCCTTTCCAAGGAGGACATCGAGCGCATGCTTTCT 519590 Query 196847 GATGCGGAAAAGTACAGGGAAGAAGACGAGG 196877 || || || ||||||| ||| || ||||||| Sbjct 519591 GAGGCTGAGAAGTACAAGGATGAGGACGAGG 519621 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 ||||| || |||| |||||||| ||| | || || || |||| || | ||| || || Sbjct 518051 GAGATCATTGCGAACGACCAAGGCAACAGGACGACACCGTCGTTTGTCGGCTTCACCGAC 518110 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || ||| | | |||||||| || || || ||| || ||||||||| ||| || Sbjct 518111 ACGGAGCGTTTGATCGGAGATGCGGCGAAGAACCAGGTGGCGATGAACCCTCACAACACC 518170 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTT 195516 ||||| |||||||||||||| || || |||||||| Sbjct 518171 GTCTTCGACGCGAAGCGTCTGATCGGCCGCAAGTT 518205 >seq547 Length=620828 Score = 176 bits (194), Expect = 6e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| || Sbjct 191587 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 191528 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||| || || ||||| ||||| || ||||| ||| Sbjct 191527 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 191468 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || || || || |||||| | || |||||| Sbjct 191467 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 191408 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || |||||||| || || ||||| || || | || || |||||||| Sbjct 191407 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGTCTGCGTGGTGGTGC 191358 >seq380 Length=739652 Score = 174 bits (192), Expect = 2e-38 Identities = 167/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||||||||| || || || || ||||| || || || || | ||||| ||||||| Sbjct 523619 GTATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGT 523678 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||||| || || ||| | || ||||||||||||| ||||| || || || ||||| | Sbjct 523679 CAGACACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACC 523738 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 ||||||| ||||| ||||||||||| ||| | || ||||| || || || || |||| Sbjct 523739 AGCAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACA 523798 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || |||| ||||| || || || || |||||||| Sbjct 523799 ACATTCAGAAGGAATCAACCCTCCATCTTGTTCT 523832 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 ||||||| || || || || ||||| ||||| || || |||||||| ||||||||||| | Sbjct 523391 GTATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTT 523450 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 |||| || ||||| || |||| |||||||||| |||||||| || ||||| ||||| | Sbjct 523451 CAGATACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACC 523510 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 |||| ||| | || || || || || || | || ||||| ||||| || | || |||| Sbjct 523511 AGCAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACA 523570 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 || | || ||||| || || || || || || || | || || || ||| Sbjct 523571 ACATCCAGAAGGAATCAACCCTTCATCTCGTCCTCCGCCTCCGTGGAGGT 523620 Score = 149 bits (164), Expect = 8e-31 Identities = 148/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 171874 GTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGAT 171933 || || || || || || || || || ||||| ||||| ||||| || || || ||||| Sbjct 523177 GTCAAGACACTCACCGGCAAGACCATTACCCTTGAGGTAGAGTCATCTGATACCATCGAC 523236 Query 171934 AACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATT 171993 ||| |||| ||||||| || || ||||| |||||||| ||||| ||||| || || ||| Sbjct 523237 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGGCTGATT 523296 Query 171994 TTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAG 172053 || ||||| || || || || ||||| ||||| | | ||||||||| |||| |||||| Sbjct 523297 TTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAG 523356 Query 172054 TCTACTCTACAC 172065 ||||| || ||| Sbjct 523357 TCTACGCTCCAC 523368 >seq384 Length=763591 Score = 100 bits (110), Expect = 4e-16 Identities = 275/412 (67%), Gaps = 17/412 (4%) Strand=Plus/Plus Query 198540 GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTGGTAAAACCCTT 198599 |||||| ||||| || ||||| | ||||||||| | ||||| || ||||| || || Sbjct 74009 GGTGCCAAGATCCCCCGCGGTGCCATCCTCGCCGGTCCTCCGGGAACCGGTAAGACGCTG 74068 Query 198600 CTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCTCCGCGG---CG 198656 || || |||| || || || || | || ||||| |||||| | || |||| || Sbjct 74069 CTCGCCAAGGCTACTGCTGGCGAGTCCGGCGTGCCCTT-CTTCAGCG-TCAGCGGTTCCG 74126 Query 198657 AGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACTCTTTGAGCAA 198716 ||||| | |||||||| |||||||| ||| | | || || || ||||| | | Sbjct 74127 AGTTTGTT-GAGATGTTTGTTGGTGTCGGTCCATCCAGAGTGCGAGACCTCTTCGCGACG 74185 Query 198717 GCACGTGAAAATCAACCATGTATCATCTTCATTGATGAGATTGACGCTGTTGGT-----A 198771 || || | || || || ||||||||||| || || || ||||| ||||| Sbjct 74186 GCTCGCAAGAACGCCCCCTGCATCATCTTCATCGACGAAATCGACGCCATTGGTCGCGCG 74245 Query 198772 AGAAGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGATTAACCAGC 198831 ||| | || | ||| | | |||||| || ||||| ||| ||| | |||||| Sbjct 74246 AGACAGGAGG-GTAACCGC-ATGGGTGGTAACGACGAGCGAGAGGCGACCCTGAACCAGA 74303 Query 198832 TTCTCACTGAGATGGATGGTTTTGACAATGAG--ACTGGTATCGTGGTGATTGCTGCTAC 198889 | || || |||||||| ||||| | | || || || | || ||| |||| | ||| Sbjct 74304 TCCTGACGGAGATGGACGGTTTCAATACCCAGGAACAGG--TGGTTGTGCTTGCAGGTAC 74361 Query 198890 AAATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGAC 198941 || || ||||| || || | || || | ||||| ||||| |||||| Sbjct 74362 CAACAGAGCCGATATTCTCGACAAGGCGTTGATGCGTCCTGGTCGTTTCGAC 74413 >seq537 Length=1778172 Score = 89.7 bits (98), Expect = 7e-13 Identities = 215/326 (66%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||||||| || | | | || ||| | || || | || || || ||| Sbjct 1538735 AAGATGAAGGAGACTGCCGAGGCCTACCTGTCTAAGCCCGTCAAGAACGCCGTCGTTACT 1538794 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || ||||| || ||||| || | | ||||| Sbjct 1538795 GTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGATGCCGGTCAGATTGCC 1538854 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| || | | |||| || || || || ||||| | || ||||||||| Sbjct 1538855 GGCCTGAACGTCCTCCGTGTCGTCAACGAGCCCACCGCCGCTGCTCTGGCCTATGGTCTG 1538914 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 || ||| | ||||| | | || ||| ||||| ||||||||||| || Sbjct 1538915 GAGAAGGAGGAGGACCGTGTT------GTCGCCGTCTACGATCTTGGTGGTGGTACTTTC 1538968 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| |||| | || | || | ||| | ||||| || ||| | || ||||| Sbjct 1538969 GATATCTCCGTCCTTGAGATCCAGAACGGTGTCTTCGAGGTCAAGTCGACCAACGGTGAC 1539028 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || || | |||||||| || || || Sbjct 1539029 ACCCACTTGGGTGGTGAGGACTTTGA 1539054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657857811409760