Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq411 98.7 3e-15 seq516 93.3 1e-13 seq469 86.0 2e-11 >seq411 Length=298490 Score = 98.7 bits (108), Expect = 3e-15 Identities = 106/140 (76%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || ||||| | || ||||| |||||| | |||||||||| Sbjct 22467 AGAATTTCCTTGAGACGCGGGACACCGAGAGTGACGTT---CTTGGAAGAAACACCAGCA 22523 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 |||||||| |||||||| || | || |||| |||||||| ||| || || || || Sbjct 22524 AAGTGGAAGGTATTCAGCGTCATCTGTGTAGCAGGCTCACCGATAGACTGAGCTGCGATG 22583 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 22584 ACACCAACCATTTCACCGGG 22603 >seq516 Length=1641395 Score = 93.3 bits (102), Expect = 1e-13 Identities = 266/406 (66%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 |||||| | |||||| ||||| || || || ||||| || || ||| | || || Sbjct 1416563 CTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGTGCCAGGG 1416622 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGC 156085 ||| ||||| || || || || | |||| |||||||| || || || ||||| Sbjct 1416623 CTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGC 1416682 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 || || ||||| || | ||||| || || | ||| ||||| ||||||||||| ||| Sbjct 1416683 GGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGCCATTGGTGCCGGC 1416742 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-T 156204 || | ||| |||| | ||||| || | | | ||||| || || | |||| | Sbjct 1416743 GATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGCCGCCAG-CCATCT 1416801 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 | || || || || ||| | ||| | | | || ||||| || || || || | || Sbjct 1416802 TTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCA 1416861 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | | || |||| ||| | ||||| | || || || |||||||| ||||| | Sbjct 1416862 TGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGG 1416921 Query 156325 GTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | | || || | ||| |||| | ||||| | | ||| ||||| Sbjct 1416922 GAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGTCTC 1416967 Score = 86.0 bits (94), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || ||||||| | |||| ||||||||||||||| || || | ||| |||||||| || Sbjct 1281453 GAAGCACCGTACGCGATCAGACAATCACGCTCCATCTCTCCTAGACGCAGACCACCGTCT 1281512 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTA 251601 |||| | |||||| | || || || || || | || | |||||| || || Sbjct 1281513 CGAGAACGACCCTCAGTCGGTTGGCGGGTAAGGATGGCCCTGGGACCGCGCGAACGAGAG 1281572 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 || |||||| | ||||| ||||| || ||||||||| | || ||| |||||||| Sbjct 1281573 TGCATCTTATCCTGCACCATGTGCTTCAGGCGCTGGTAGTAGATTGGTCCGTTGAAGATG 1281632 >seq469 Length=188749 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | ||||||||||||||||||||| || |||||||| ||||||||||| || Sbjct 167303 GCACCATGAGCAATCATACAATCACGCTCCATCTCTCCGAAACGCAGACCACCATCACGC 167244 Query 251545 GCCCTACCCTCGGCAGGCTG 251564 || | ||||| ||||||| Sbjct 167243 GCACGGCCCTCAACAGGCTG 167224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807077424046