Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq303 197 2e-44
seq516 188 9e-42
seq449 145 9e-29
seq400 127 2e-23
>seq303
Length=766989
Score = 197 bits (218), Expect = 2e-44
Identities = 277/389 (71%), Gaps = 6/389 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||| ||| |||| |||| ||||| ||||| ||||| |
Sbjct 539449 GGCGAGTCCCACGGCAAGTCCGTGGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 539508
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||| ||||||||||||| ||| | | || ||||| || |||||| |||| |
Sbjct 539509 CTCACCGAGTCCGACATCCAGCCCCAGCTCAACCGCCGCCGTCCCGGCCAGAGCGCTATC 539568
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||||||||||||| || ||||| |||||||| ||||| ||| |||| ||
Sbjct 539569 ACGACGCCGCGCAACGAGAAGGACCGCGTGGTCATCCAGAGCGGCACCGAGTTCGGCGTC 539628
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337
|| |||||| | || ||||| | | || || ||||| || ||| |||||
Sbjct 539629 ACTCTCGGCACCCCGATCGGCATGCTCGTCCAGAATGAGGACCAACGCCCCCGCGACTAC 539688
Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
| ||| |||| || | | || || || || |||||||||| |||||| | |
Sbjct 539689 GGCAACTCCACCATGGACAGGTTCCCCCGCCCGTCCCACGCCGACTGGACCTACCTAGAG 539748
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453
||||||||| ||||||| || ||||| ||||| || |||||||||||| |
Sbjct 539749 AAGTACGGCGTCAAGGCCAGCTCCGGCGGTGGCCGCAGCTCAGCCCGCGAGACCATTGCC 539808
Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|||||||| ||||| || ||||||||||
Sbjct 539809 CGCGTCGCTGCCGGTGCCCTCGCCGAGAA 539837
Score = 127 bits (140), Expect = 2e-23
Identities = 125/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103
|||||| ||||||||||| || || || ||| |||||| ||| | | |||||||
Sbjct 540070 GAGGACTCTATCGGCGGCACCGTCACCTGTGTGATCCGCAACCCGCCCTCGGCCCTCGGC 540129
Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163
||||| ||||| |||||| |||||||| |||||| ||||||||||| ||||| |||
Sbjct 540130 GAGCCTTGCTTCGACAAGCTCGAGGCCCAGCTCGCGCACGCCATGCTCAGCATCCCCGCC 540189
Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202
|||||||| |||||||| ||| ||| || |||| ||||
Sbjct 540190 ACCAAGGGCTTCGAGATCGGCTCCGGCTTCGGCGGCTGCG 540229
>seq516
Length=1641395
Score = 188 bits (208), Expect = 9e-42
Identities = 336/490 (69%), Gaps = 19/490 (4%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| || || || |||||||| | || ||||||||
Sbjct 1416665 CTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGA 1416724
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||| |||||||| || | ||| | ||| | ||||| | ||| || | |||
Sbjct 1416725 GGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCC 1416784
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|||||||| ||| ||| ||||| | || ||| ||||| |||||||||||||| ||
Sbjct 1416785 AATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTC 1416844
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||||| |||||||||| || || ||||| || || ||| | || | || ||
Sbjct 1416845 GATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACC 1416904
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||||||||| || ||||| | || |||||| |||| | ||||| || ||||||
Sbjct 1416905 GGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGT 1416964
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
||| |||||| || |||| | | ||| || |||| || ||
Sbjct 1416965 CTCGATGACGCGC------------TCAACGTTGTC---CCCCCAGATACCGACAGCAAC 1417009
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| | |||| ||| ||| || |||| ||||| ||
Sbjct 1417010 ACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAGGTATGA 1417069
Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA--GGAAAAGGCAAAATCGCGGTCGTGGCGGATG 1630542
|| | |||| ||| ||||||||| || || | || || ||||| | | |||
Sbjct 1417070 CCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTAATTG--AAGTCACGGTCATAGACAATG 1417127
Query 1630543 GCGGCGTCGA 1630552
|||| |||||
Sbjct 1417128 GCGGAGTCGA 1417137
Score = 93.3 bits (102), Expect = 5e-13
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 1628372 CGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCAC 1628431
|||| ||||| ||| |||||||| |||| ||||| | ||||| ||| ||||||
Sbjct 1416436 CGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACTCGCCAT 1416495
Query 1628432 CGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCG 1628491
| || | | ||| ||||| || |||| || || ||||| ||||| |
Sbjct 1416496 TCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGG 1416555
Query 1628492 CCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGT 1628551
| || |||||| |||||||||||||| ||| || | | |||| || |||||||
Sbjct 1416556 CACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGT 1416615
Query 1628552 GCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600
|||| ||||| || ||| ||| |||||||| ||||||| ||| ||
Sbjct 1416616 GCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACC 1416664
>seq449
Length=641369
Score = 145 bits (160), Expect = 9e-29
Identities = 101/115 (88%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||||||||| |||||||| || |||||| | || |||||| |||| ||||||
Sbjct 510403 GCCTCCAACTACCTCGATATCAAGCCCCTCCTCGATGTCGGCTGCAAGACTGTCGCCAAC 510344
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| |||||||||||||| |||||||| ||||||| | |||
Sbjct 510343 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACCTTCAACATCACGAACG 510289
Score = 116 bits (128), Expect = 5e-20
Identities = 171/242 (71%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||| | || ||| |||||| |||||||||||||| |||| |||||
Sbjct 271810 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATG 271869
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| | | || || | |
Sbjct 271870 TTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACA 271929
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||| ||||| || || |||||||||||||| ||| | | | |||||||||||
Sbjct 271930 AGCAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGA 271989
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || ||||| | |||| ||| ||||| | ||| |||| ||| || ||||| ||
Sbjct 271990 AGAGCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATA 272049
Query 868931 AT 868932
||
Sbjct 272050 AT 272051
Score = 107 bits (118), Expect = 2e-17
Identities = 177/252 (70%), Gaps = 5/252 (2%)
Strand=Plus/Plus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
|||||||||||||| || ||||||||||||||| ||| | |||||| ||||||
Sbjct 272464 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGGGCCTCTGGAACTTGG 272523
Query 869693 ACCTCCTTCA-TGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAA 869751
|||| || || |||| || || | ||||||||| || ||||||||| ||||||||
Sbjct 272524 ACCT-CTCCACTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTCGGAAGCGGCGAA 272582
Query 869752 AAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTG 869808
|| || || | ||| ||| |||| ||| || || ||| | |||||
Sbjct 272583 GAAGGCAAGAATGTGAGAGATGAAGTATTTCTCATCATCATTGATCTTGTTGTTCCAGTC 272642
Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868
| | ||| | || || | ||||||||| ||||||| |||||||| ||||| ||
Sbjct 272643 GTGGAGGTCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCAGCCTTCTT 272702
Query 869869 GTACATCTCCCA 869880
|||||| | |||
Sbjct 272703 GTACATTTGCCA 272714
Score = 96.9 bits (106), Expect = 4e-14
Identities = 143/197 (73%), Gaps = 13/197 (7%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | ||||| || | || ||||||||||| ||||||||
Sbjct 272124 ACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGACCGCGCTT 272183
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCGAGAAA-AAGATGCCCTCGACGGCGGCA 869296
||| ||||| |||||| | || | || ||| ||| ||||| ||||| ||||| |||
Sbjct 272184 CTTCAGCCAGAAGATG--GAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACGGCAGCA 272241
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATC 869353
||| | | || |||| |||||||||| || || || || ||||||||| |
Sbjct 272242 AAGGCAACTAGACGCTGGGCAAAGGTG--GA----CTTCTGGTCGGAGATCCACTTGAGA 272295
Query 869354 GCCCAGTCGGCCTTTTT 869370
|||||||||||||| ||
Sbjct 272296 GCCCAGTCGGCCTTCTT 272312
>seq400
Length=1139448
Score = 127 bits (140), Expect = 2e-23
Identities = 253/364 (70%), Gaps = 17/364 (5%)
Strand=Plus/Plus
Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751
||||||||||| | |||||||| || || |||| | | | |||||||||||||||||||
Sbjct 49991 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 50049
Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811
|||||| || | | ||| | || |||| ||||||||| | |||| |||||| ||||
Sbjct 50050 AGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 50109
Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA-GGAC 1726868
| || || | |||||| | | | ||| || | || |||| ||| ||
Sbjct 50110 GGGCACCGATGGCGCCGACGGAGATGAAGTCGGCGAGGAACTGGGGG----GAGATGGTG 50165
Query 1726869 T-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927
| ||| | |||| ||| | |||| || | ||||| || || ||||| || || ||
Sbjct 50166 TCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTGG 50222
Query 1726928 C--GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGG 1726985
| | ||||| | ||||| | | | | | | ||||| |||||||||| ||
Sbjct 50223 CGGGAGACGCGG--AGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCGGGGTCGTTGA 50280
Query 1726986 CCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGC 1727045
|| |||||||| |||||||| || || ||||| |||| ||||||||||||| ||||
Sbjct 50281 TGAGACCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGC 50340
Query 1727046 AAAG 1727049
| ||
Sbjct 50341 AGAG 50344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107093407906886
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