Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq303 197 2e-44 seq516 188 9e-42 seq449 145 9e-29 seq400 127 2e-23 >seq303 Length=766989 Score = 197 bits (218), Expect = 2e-44 Identities = 277/389 (71%), Gaps = 6/389 (2%) Strand=Plus/Plus Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159 |||||||| ||||| | ||| ||| |||| |||| ||||| ||||| ||||| | Sbjct 539449 GGCGAGTCCCACGGCAAGTCCGTGGGCGTCATCGTCGATGGCGTCCCGCCCGGCATGGCC 539508 Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219 || ||||| ||||||||||||| ||| | | || ||||| || |||||| |||| | Sbjct 539509 CTCACCGAGTCCGACATCCAGCCCCAGCTCAACCGCCGCCGTCCCGGCCAGAGCGCTATC 539568 Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279 | ||||||||||||||| || ||||| |||||||| ||||| ||| |||| || Sbjct 539569 ACGACGCCGCGCAACGAGAAGGACCGCGTGGTCATCCAGAGCGGCACCGAGTTCGGCGTC 539628 Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACT-- 18337 || |||||| | || ||||| | | || || ||||| || ||| ||||| Sbjct 539629 ACTCTCGGCACCCCGATCGGCATGCTCGTCCAGAATGAGGACCAACGCCCCCGCGACTAC 539688 Query 18338 ----ATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393 | ||| |||| || | | || || || || |||||||||| |||||| | | Sbjct 539689 GGCAACTCCACCATGGACAGGTTCCCCCGCCCGTCCCACGCCGACTGGACCTACCTAGAG 539748 Query 18394 AAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATG 18453 ||||||||| ||||||| || ||||| ||||| || |||||||||||| | Sbjct 539749 AAGTACGGCGTCAAGGCCAGCTCCGGCGGTGGCCGCAGCTCAGCCCGCGAGACCATTGCC 539808 Query 18454 CGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 |||||||| ||||| || |||||||||| Sbjct 539809 CGCGTCGCTGCCGGTGCCCTCGCCGAGAA 539837 Score = 127 bits (140), Expect = 2e-23 Identities = 125/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 19044 GAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGC 19103 |||||| ||||||||||| || || || ||| |||||| ||| | | ||||||| Sbjct 540070 GAGGACTCTATCGGCGGCACCGTCACCTGTGTGATCCGCAACCCGCCCTCGGCCCTCGGC 540129 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| ||||| |||||| |||||||| |||||| ||||||||||| ||||| ||| Sbjct 540130 GAGCCTTGCTTCGACAAGCTCGAGGCCCAGCTCGCGCACGCCATGCTCAGCATCCCCGCC 540189 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTT-TGCGGGTGCG 19202 |||||||| |||||||| ||| ||| || |||| |||| Sbjct 540190 ACCAAGGGCTTCGAGATCGGCTCCGGCTTCGGCGGCTGCG 540229 >seq516 Length=1641395 Score = 188 bits (208), Expect = 9e-42 Identities = 336/490 (69%), Gaps = 19/490 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| || || || |||||||| | || |||||||| Sbjct 1416665 CTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGA 1416724 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||| |||||||| || | ||| | ||| | ||||| | ||| || | ||| Sbjct 1416725 GGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCC 1416784 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||||| ||| ||| ||||| | || ||| ||||| |||||||||||||| || Sbjct 1416785 AATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTC 1416844 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||||| |||||||||| || || ||||| || || ||| | || | || || Sbjct 1416845 GATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACC 1416904 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||| || ||||| | || |||||| |||| | ||||| || |||||| Sbjct 1416905 GGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGT 1416964 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 ||| |||||| || |||| | | ||| || |||| || || Sbjct 1416965 CTCGATGACGCGC------------TCAACGTTGTC---CCCCCAGATACCGACAGCAAC 1417009 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| |||||| | |||| ||| ||| || |||| ||||| || Sbjct 1417010 ACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAGGTATGA 1417069 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA--GGAAAAGGCAAAATCGCGGTCGTGGCGGATG 1630542 || | |||| ||| ||||||||| || || | || || ||||| | | ||| Sbjct 1417070 CCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTAATTG--AAGTCACGGTCATAGACAATG 1417127 Query 1630543 GCGGCGTCGA 1630552 |||| ||||| Sbjct 1417128 GCGGAGTCGA 1417137 Score = 93.3 bits (102), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1628372 CGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCAC 1628431 |||| ||||| ||| |||||||| |||| ||||| | ||||| ||| |||||| Sbjct 1416436 CGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACTCGCCAT 1416495 Query 1628432 CGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCG 1628491 | || | | ||| ||||| || |||| || || ||||| ||||| | Sbjct 1416496 TCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGATCGCGGG 1416555 Query 1628492 CCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGT 1628551 | || |||||| |||||||||||||| ||| || | | |||| || ||||||| Sbjct 1416556 CACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACATCGGCGT 1416615 Query 1628552 GCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||| ||||| || ||| ||| |||||||| ||||||| ||| || Sbjct 1416616 GCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACC 1416664 >seq449 Length=641369 Score = 145 bits (160), Expect = 9e-29 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||||||||| |||||||| || |||||| | || |||||| |||| |||||| Sbjct 510403 GCCTCCAACTACCTCGATATCAAGCCCCTCCTCGATGTCGGCTGCAAGACTGTCGCCAAC 510344 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| |||||||||||||| |||||||| ||||||| | ||| Sbjct 510343 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACCTTCAACATCACGAACG 510289 Score = 116 bits (128), Expect = 5e-20 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| |||| ||||| Sbjct 271810 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATG 271869 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| | | || || | | Sbjct 271870 TTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACA 271929 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| || || |||||||||||||| ||| | | | ||||||||||| Sbjct 271930 AGCAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGA 271989 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| ||| ||||| | ||| |||| ||| || ||||| || Sbjct 271990 AGAGCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATA 272049 Query 868931 AT 868932 || Sbjct 272050 AT 272051 Score = 107 bits (118), Expect = 2e-17 Identities = 177/252 (70%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | |||||| |||||| Sbjct 272464 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGGGCCTCTGGAACTTGG 272523 Query 869693 ACCTCCTTCA-TGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAA 869751 |||| || || |||| || || | ||||||||| || ||||||||| |||||||| Sbjct 272524 ACCT-CTCCACTGAAGCGCTCGACAAGGTTCTCGTTGACAATGCCGTCGGAAGCGGCGAA 272582 Query 869752 AAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGC---GACACCCAGTG 869808 || || || | ||| ||| |||| ||| || || ||| | ||||| Sbjct 272583 GAAGGCAAGAATGTGAGAGATGAAGTATTTCTCATCATCATTGATCTTGTTGTTCCAGTC 272642 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 | | ||| | || || | ||||||||| ||||||| |||||||| ||||| || Sbjct 272643 GTGGAGGTCCTTGGACAGATCAATCTCCTCGGCAGTCCAGAAAGAGGCCTCAGCCTTCTT 272702 Query 869869 GTACATCTCCCA 869880 |||||| | ||| Sbjct 272703 GTACATTTGCCA 272714 Score = 96.9 bits (106), Expect = 4e-14 Identities = 143/197 (73%), Gaps = 13/197 (7%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | ||||| || | || ||||||||||| |||||||| Sbjct 272124 ACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGACCGCGCTT 272183 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCGAGAAA-AAGATGCCCTCGACGGCGGCA 869296 ||| ||||| |||||| | || | || ||| ||| ||||| ||||| ||||| ||| Sbjct 272184 CTTCAGCCAGAAGATG--GAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACGGCAGCA 272241 Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATC 869353 ||| | | || |||| |||||||||| || || || || ||||||||| | Sbjct 272242 AAGGCAACTAGACGCTGGGCAAAGGTG--GA----CTTCTGGTCGGAGATCCACTTGAGA 272295 Query 869354 GCCCAGTCGGCCTTTTT 869370 |||||||||||||| || Sbjct 272296 GCCCAGTCGGCCTTCTT 272312 >seq400 Length=1139448 Score = 127 bits (140), Expect = 2e-23 Identities = 253/364 (70%), Gaps = 17/364 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || |||| | | | ||||||||||||||||||| Sbjct 49991 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCGAGGTTGCCGTCGGTGCCGTTCTTGA 50049 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||||| || | | ||| | || |||| ||||||||| | |||| |||||| |||| Sbjct 50050 AGCCGACGGGGAAGGACAGGCCGGAGGCCAGCTCGCGGTGGAGCTGGGACTCGGTGGTGC 50109 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA--AATAAGGGGCCACCAGA-GGAC 1726868 | || || | |||||| | | | ||| || | || |||| ||| || Sbjct 50110 GGGCACCGATGGCGCCGACGGAGATGAAGTCGGCGAGGAACTGGGGG----GAGATGGTG 50165 Query 1726869 T-GAGAAACTCGACGGCCACGGGCTGATCGACGGCGACGACGAGATCGCGCAACAGGCGG 1726927 | ||| | |||| ||| | |||| || | ||||| || || ||||| || || || Sbjct 50166 TCGAGCATCTCGCTGGCGATGGGC--AT-GCCGGCGGCGGTCAGGTCGCGGAAGAGCTGG 50222 Query 1726928 C--GCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGG 1726985 | | ||||| | ||||| | | | | | | ||||| |||||||||| || Sbjct 50223 CGGGAGACGCGG--AGGCCCTTGTTGATCTTGAAGGTGGAGTCGATGTCGGGGTCGTTGA 50280 Query 1726986 CCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGC 1727045 || |||||||| |||||||| || || ||||| |||| ||||||||||||| |||| Sbjct 50281 TGAGACCCTTCCAGCCGACGGTGGTACGGGGCTTCTCGAGGTAGGCGCGCATGATGACGC 50340 Query 1727046 AAAG 1727049 | || Sbjct 50341 AGAG 50344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107093407906886