Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq380 113 4e-20 seq547 104 2e-17 >seq380 Length=739652 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || ||||| || || ||||| || || ||||| | | || || | || | Sbjct 523180 AAGACACTCACCGGCAAGACCATTACCCTTGAGGTAGAGTCATCTGATACCATCGACAAC 523239 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || ||||| || || || |||| || Sbjct 523240 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGGCTGATTTTC 523299 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || || || |||||| | | |||| ||||| |||||||| ||||| || Sbjct 523300 GCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAGTCT 523359 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || |||||||||||||| ||||||||||| Sbjct 523360 ACGCTCCACTTGGTGTTGCGTTTGCGCGGAGG 523391 >seq547 Length=620828 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || ||||| ||||| || || || || || | || Sbjct 191587 ATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCC 191528 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 191527 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 191468 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| ||||| || ||||| ||||| | | | | || || || ||| Sbjct 191467 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 191408 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | || |||| |||| || || Sbjct 191407 ATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGTCTGCGTGGTGG 191361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449894461964240