Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq449 100 2e-16 >seq449 Length=641369 Score = 100 bits (110), Expect = 2e-16 Identities = 195/286 (68%), Gaps = 4/286 (1%) Strand=Plus/Plus Query 34351 ACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCG 34410 || |||||| ||||| ||||| || ||||||| | ||| ||| || ||| || ||| Sbjct 166169 ACGAACTTGTTAATGAAGCCATCGAGGTGGTCCTGAAGCTTGGCGGCGTTGTGTGAACCG 166228 Query 34411 TTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCG 34470 |||| ||| | || || | | ||||| | || || || || |||||| | ||| Sbjct 166229 TTGATGATCCAACGGTCATCGGCGGGGTCGACGTTGGTCTGGGCACCGAGCTCGAAACCG 166288 Query 34471 AAGTACTTTGTCGGGTAAATG--GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGT 34528 |||||||| | | | || | | || || |||| | || |||| | || || Sbjct 166289 AAGTACTTGAT--GATGAAGGCACCGGGGCGAGCAAGAGACTGAGCGACGCTGCTCAGGT 166346 Query 34529 TGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCA 34588 |||||| || |||||||| ||||||||||| || |||| ||||| | || || Sbjct 166347 TGACGACAACGGTCTTGATACCGTTGCCCTTACCCTCGATCTTGGTGACGAGCTTTTCCA 166406 Query 34589 TTTTGTAGCGGTAGAACGCGTCCGCCACATTGCGGTTAACGTTCAC 34634 | |||||||| ||||| |||||| |||| ||| |||||| || Sbjct 166407 TCTTGTAGCGATAGAAAGCGTCCTTGACATCGCGACGAACGTTGAC 166452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838792419094