Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq516 145 1e-28 seq449 140 5e-27 >seq516 Length=1641395 Score = 145 bits (160), Expect = 1e-28 Identities = 335/503 (67%), Gaps = 19/503 (4%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| ||||| || |||| ||| || || || |||||||| | | |||||||| Sbjct 1416665 CTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGA 1416724 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||| |||||||| || | ||| | ||| | ||||| | ||| || | ||| Sbjct 1416725 GGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCC 1416784 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||||| ||| ||| ||||| | || ||| | || || || ||||||||||| || Sbjct 1416785 AATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTC 1416844 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||||| |||||||||| | || ||||| || || ||| | | | || || Sbjct 1416845 GATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACC 1416904 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 ||| ||||| || ||||| | || ||| | ||| ||||| | |||||| Sbjct 1416905 GGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGACATCAAGTTGTAGGT 1416964 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| |||||| | | ||| ||| ||| || |||| || || Sbjct 1416965 CTCGATGACGCGCTCAA---CGT------TGTC------CCCCCAGATACCGACAGCAAC 1417009 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGACGGCGTCGCG--CACCTTGGTCAGGTAG 2073957 ||||||||||||| |||||||| |||| ||| | || || || |||| ||||| Sbjct 1417010 ACGCATGATCATGTGCTGGGGTCTCTCGGCGA--TCTTCCCGTCCAGCTTGAGGAGGTAT 1417067 Query 2073958 GACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGATG 2074017 |||| |||||| | ||||||||| ||| | ||| || || | | ||| Sbjct 1417068 GACCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAGTCACGGTCATAGACAATG 1417127 Query 2074018 GCGGCGTCGAGGGCCTCCTTGTG 2074040 |||| ||||| |||||||||| Sbjct 1417128 GCGGAGTCGAACTCCTCCTTGTG 1417150 >seq449 Length=641369 Score = 140 bits (154), Expect = 5e-27 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||||||||| |||||||||||||||||| | || |||||||| || |||||| Sbjct 510403 GCCTCCAACTACCTCGATATCAAGCCCCTCCTCGATGTCGGCTGCAAGACTGTCGCCAAC 510344 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||||||||| |||||||| ||||| |||||||| ||||||| | ||| Sbjct 510343 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGTAAGACCTTCAACATCACGAACG 510289 Score = 105 bits (116), Expect = 1e-16 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||| | || ||| |||||| |||||||||||||| ||| Sbjct 271802 TGACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGA 271861 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | | |||| ||| | | || | Sbjct 271862 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCA 271921 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | ||||||| ||||| || ||||| || |||||||| ||| | | | ||||| Sbjct 271922 GGGCAACAAGCAGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCA 271981 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || |||||| | |||| | | ||||| | ||| |||| ||| || | Sbjct 271982 TGCCGAGAAGAGCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGT 272041 Query 794131 CGA 794133 ||| Sbjct 272042 CGA 272044 Score = 102 bits (112), Expect = 1e-15 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGAT 794606 ||||| ||||| ||||||| ||| | || | | || ||||||| |||||||||||| Sbjct 272386 GTGTCAATGGCATTGAAGAGGTAGGTGCG-CTGGGCGGGCTCCTTGATGTAGGTGTCGAT 272444 Query 794607 GAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||||| ||||||||||| ||||||||||| || || |||||||||||| || ||||| Sbjct 272445 AAGGAGAGAGTAGGTCTCAGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCA 272504 Score = 91.5 bits (100), Expect = 2e-12 Identities = 144/198 (73%), Gaps = 15/198 (8%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTT-GCTAAAG-CAGAGGCCGGGCATGAGGCCGCGC 794397 ||| ||||| ||| ||| | ||||| | || | |||| ||||||||||| |||||| Sbjct 272124 ACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGA--CCGGGCATGAGACCGCGC 272181 Query 794398 TTCTTGAGCCAAAAGATGGCACAGAAACTGC-CCGAGAAA-AAGATGCCCTCGACGGCGG 794455 ||||| ||||| ||||||| | ||| || ||| ||| ||||| ||||| ||||| | Sbjct 272182 TTCTTCAGCCAGAAGATGGAAGCGAA--GGCACCGCTAAAGAAGATACCCTCAACGGCAG 272239 Query 794456 CAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT--TTGTTGATCCACTTCAT 794513 ||||| | || || |||| |||||| || || | ||| | | ||||||||| | Sbjct 272240 CAAAGGCAACTAGACGCTGGGCAAAGGT-----GGACTTCTGGTCGGAGATCCACTTGAG 272294 Query 794514 CGCCCACTCTGCCttttt 794531 ||||| || ||||| || Sbjct 272295 AGCCCAGTCGGCCTTCTT 272312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916187042994962