Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq547 134 9e-27 seq380 122 6e-23 seq487 114 8e-21 >seq547 Length=620828 Score = 134 bits (148), Expect = 9e-27 Identities = 163/220 (74%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||| ||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 191375 CAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 191434 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 191435 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 191494 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTA 34940 | || || ||||| || | ||||| || | ||| || |||| ||| | Sbjct 191495 CTGGATCTTGGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGA 191550 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 | ||||| ||||| |||||||| || |||||||||||||| Sbjct 191551 TAGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCATGAT 191590 >seq380 Length=739652 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| || || | || |||| Sbjct 523604 AGGACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCC 523545 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||||||||||||||| ||| |||||||| | || | |||||||| || Sbjct 523544 TCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCC 523485 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | |||| || | ||| || |||| ||| || ||| Sbjct 523484 TGAATCTTGGACTTGACATTGTCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTC 523425 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || || |||||||| Sbjct 523424 TTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 523393 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | ||| | || |||| ||| | || ||||||||||||||| || || || Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 | | || |||| || |||||||| || ||||| ||||| || |||||||| | || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || |||||| | || | ||| | ||| || Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTACC 523212 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 |||| ||| |||||||| || ||||| ||||| || Sbjct 523211 TCAAGGGTAATGGTCTTGCCGGTGAGTGTCTTGAC 523177 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||||||||| ||||| || |||| |||| |||| ||||| || || ||| Sbjct 523811 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAG 523752 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||||||||| | || | ||||||||||| | || || || ||| Sbjct 523751 ATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTG 523692 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | |||| || | |||||| || | || || ||||| || ||||| ||||| || Sbjct 523691 TCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACG 523632 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 523631 AAGATTTGCAT 523621 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||||||||||||| ||||| || || | || |||| Sbjct 523096 AGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCC 523037 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 523036 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 522978 >seq487 Length=725459 Score = 114 bits (126), Expect = 8e-21 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| | || || || ||||| |||||||||| Sbjct 202799 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 202740 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || |||||||| | || | ||||||||||| | || || ||||| Sbjct 202739 TCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 202680 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| ||| || |||||| |||| ||| |||||||| ||||| |||||||| || | Sbjct 202679 CGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 202620 Query 34968 A 34968 | Sbjct 202619 A 202619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325690585085402