Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq380 109 1e-18 >seq380 Length=739652 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| ||||| | || || || ||||| ||||| || || || || ||| | | Sbjct 523838 AAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGG 523779 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || | || || ||||||||||| || | ||| || || || || || || ||| Sbjct 523778 CCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCC 523719 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||||||||| | || || || |||||||| || | || || ||||| || Sbjct 523718 TTGTCTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTA 523659 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| || | ||||| || || || ||||| Sbjct 523658 ATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820180549162