Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq516 228 8e-55 seq547 129 6e-25 seq380 127 2e-24 seq487 114 1e-20 >seq516 Length=1641395 Score = 228 bits (252), Expect = 8e-55 Identities = 1204/1879 (64%), Gaps = 75/1879 (4%) Strand=Plus/Plus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 ||||| | ||||| ||||| ||||||||||| ||||| ||||| | ||| || | Sbjct 1415292 GCAGCCGCCTGAGTTCGCAGGTAGTACATGCCTGTCTTCAGGCCGAGCTTCCAACCGGCG 1415351 Query 147999 TCGTGCA--CCGACGA-CATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGAC 148055 ||||| | | || | || | || ||||||| | || | || | ||| Sbjct 1415352 AAGTGCATGCTGGTGATCTTGCCCATG---GTCGGGTCCTTCATGTGAATGTTGAGGGAC 1415408 Query 148056 TGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GTCGCTTTATCT 148113 || |||||| ||||| || |||||||| |||||||| | || | ||| | | Sbjct 1415409 TGCGACTGGTCGATGAAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGAGAG 1415468 Query 148114 TCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCT 148173 || |||||| | ||||||||||| ||| | | | || ||| |||| || Sbjct 1415469 --ATTTCCCAGACGGTCTTGTACAGAGCCTTCACCTCGGCCGGGATGTTCGGGATGTTCT 1415526 Query 148174 GCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCT 148233 | || || ||| | || | || | || ||| | || | | ||| | || Sbjct 1415527 GAACAGAACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAGGCCCATCT 1415586 Query 148234 CGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCC 148293 ||| ||| || | || || | | || || ||||| ||||||||||| || || || | Sbjct 1415587 CGACCAGATCCTTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCCAGTACACGGC 1415646 Query 148294 GCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGG 148353 || | || | |||| || ||||||| || |||| |||| ||||| ||||||| || Sbjct 1415647 GCTGGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGG 1415706 Query 148354 TCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTT 148413 | | || || |||||| || || ||||| |||||| | |||| | | | || | Sbjct 1415707 TGCTGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCT 1415766 Query 148414 TGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACT 148473 |||||| | |||||||||| | ||||| |||| ||||||||| |||| Sbjct 1415767 GCTCCTTCAGCGAGTCCCAGTCCCATAAGTCGGACGGCTTCACTCCCCACATGTCATACT 1415826 Query 148474 GCAGAATG-CCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCC 148532 | || | || || | || | |||||||| || ||| | || | | || Sbjct 1415827 GGAGCTCGCCCTTGGAGATAGGCG-AACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTG 1415885 Query 148533 GCCAGTTCGCAGCTCGCCTCG--AGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | | | | || || ||| ||| || |||||| || | | | Sbjct 1415886 GCCAGCT-GCA-CCGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTAT 1415943 Query 148591 TGAGCAGCGC-CGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCA 148649 | || | ||| ||| | ||| | |||| |||||| || || || || ||| Sbjct 1415944 TAAG-ATCGCGAGCCTCAGGGGACTCGAAGGGCAGACGCAGAGCCAAGAAAGCATCAGCA 1416002 Query 148650 AGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG 148709 || || || || || | ||| || || ||||| |||||| | || || ||| | Sbjct 1416003 AGACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGC-CTCCGG 1416061 Query 148710 AGC-GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAAT 148768 | | || ||||||||| || |||||| ||| || ||||| || || |||| || | Sbjct 1416062 AACAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGT 1416121 Query 148769 TCTGCGCAGCAATTCAAAATCGTA---------CTTGTCATCTAC-GATGCATCGGTTCA 148818 | ||| | || ||||| |||| || || ||||| || || Sbjct 1416122 CTCATGGAGCTTCTGGAAGTCGTATGCACTCTCGTTGTAGTCGACAAATGCA--GG--CA 1416177 Query 148819 CGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCT 148878 ||||| ||||| | ||||| || || ||| || || |||| |||||| | ||||| Sbjct 1416178 GGGCGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCT 1416237 Query 148879 CGGCGCACAGATTGCTGCATT--TGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTT 148936 | | |||||||||| | ||| ||| || | |||||| || |||||||||| ||| Sbjct 1416238 CAGTGCACAGATTG--GAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 1416295 Query 148937 GCACGCG-TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG- 148994 | || | ||||| || |||||| |||| ||||| || ||| | || | ||| Sbjct 1416296 G-GCGTGATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGG 1416354 Query 148995 -AACCGATGCAGGTCCTGCGC----GCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGT 149049 | | | || | || || | ||||| || | | ||||| |||||| Sbjct 1416355 CATACCA--GAGCTTTTGAGCCTTTAGGGTCTTGCGGCCCTT----GCCCTCGCGCTCGT 1416408 Query 149050 ATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGT 149109 | ||||| ||| ||| | ||||| ||||| ||| | || |||||||||| || Sbjct 1416409 ACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGT 1416468 Query 149110 GCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCA 149169 || |||||||||| |||| |||| | | | ||| | |||||| || |||||||| | Sbjct 1416469 TGGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAA 1416528 Query 149170 CCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCA 149229 |||||| || | ||| ||||| || || || ||| ||| ||| | Sbjct 1416529 TCCAGAGGGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGA 1416588 Query 149230 GGT-TGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 | | || || | ||| | || |||||||| ||||| | || | |||| ||||| Sbjct 1416589 GATCCAAGAACTC-GAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCG 1416647 Query 149289 TTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 |||| ||||| ||||||||||||| ||| | ||||||| || ||||||| ||| Sbjct 1416648 GGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATG 1416707 Query 149346 GGTTCAATGCCAC---TGGCAGTGCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTC 149400 || ||| ||| ||| ||||| || || | ||| ||| ||| || | Sbjct 1416708 GG---GATGACACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGA--GCCAGTAGCGC 1416762 Query 149401 GCACTTTGTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCA-GTC 149458 | | ||| ||||| | ||| |||||||| ||| | ||||||||| || || ||| Sbjct 1416763 GAATGCGGTGGACGTTCATGCCAATGCCGCCAGCCAT-CTTTGAGATCATGGCACACGTC 1416821 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || ||||||||| |||||| ||| ||||||| | || ||||| || Sbjct 1416822 -TTGAGAGTGTCGTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGA 1416880 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGT-AAAAT 149577 ||| ||| | | || ||||| ||||| ||||| |||||| || |||| Sbjct 1416881 AGACAGTTGAGCCTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAA 1416940 Query 149578 ATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGC 149637 || || | ||||| | ||| | ||||| ||||| || | || || || ||| | Sbjct 1416941 CTTGCTTG-ACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATAC 1416999 Query 149638 CTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCA-CTTTGTTTCCAATTTTG 149696 | | || || ||||| | ||| ||||| |||| ||| || | ||| ||| | ||| Sbjct 1417000 CGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCC-AGCTTG 1417058 Query 149697 AGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756 || | ||| | || || |||||| |||||||||| | ||| | ||||| ||| | Sbjct 1417059 AGGAGGTATGACCTCTCAAGGGTCTTGAAGCCAAAGTATTGGTAATTGAAGTCACGGTCA 1417118 Query 149757 TGGTCAATGGCGGCGTCGA 149775 | | ||||||||| ||||| Sbjct 1417119 TAGACAATGGCGGAGTCGA 1417137 >seq547 Length=620828 Score = 129 bits (142), Expect = 6e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| |||||||||||||||||| Sbjct 191390 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 191449 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 191450 GGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT 191509 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || || || || || || Sbjct 191510 GACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTAAGGGT 191569 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 191570 CTTCACGAAGATCTGCATG 191588 >seq380 Length=739652 Score = 127 bits (140), Expect = 2e-24 Identities = 134/174 (77%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| | ||| | | | ||||||||||||||||| Sbjct 523081 GTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCA-TCCTCGAGCTGCTTGCC 523023 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| || ||||||||||||||||| ||||| |||||||| |||||| ||| Sbjct 523022 AGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 522963 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | || | ||||||| || ||| || |||| |||| ||| |||||||| Sbjct 522962 GACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 522909 Score = 116 bits (128), Expect = 4e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||||||| || || ||| | |||||||| |||||||| Sbjct 523361 GTAGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCA-TCCTCGAGTTGCTTGCC 523303 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| ||||||||||||||||| || ||||| |||||||| |||||| ||| Sbjct 523302 AGCGAAAATCAGCCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTT 523243 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | || || | | ||| || || | ||| | ||| |||||||| || || Sbjct 523242 GACGTTGTCGATGGTATCAGATGACTCTACCTCAAGGGTAATGGTCTTGCCGGTGAGTGT 523183 Query 133643 TTTTACGA 133650 || |||| Sbjct 523182 CTTGACGA 523175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| |||| || ||| | | | ||||| | || Sbjct 523824 ATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCA-TCCTCCAACT 523766 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || || ||||||||||| ||||| || |||||||| |||| Sbjct 523765 GCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAATCT 523706 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| |||||| | | ||| || || | || | || ||||| | Sbjct 523705 TGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGCCAG 523646 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| || ||||| Sbjct 523645 TGAGAGTCTTGACGAAGATTTGCAT 523621 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| || || ||| | ||||| | | Sbjct 523596 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCA-TCCTCCAATT 523538 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | |||||||||||||| || || || ||||| || |||| Sbjct 523537 GCTTTCCGGCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCT 523478 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||| || | | ||| || || | ||||| || ||||| | Sbjct 523477 TGGACTTGACATTGTCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAG 523418 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || |||||||||||||| Sbjct 523417 TGAGGGTCTTGACGAAAATCTGCAT 523393 >seq487 Length=725459 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | || | ||||||||||| ||||| ||||| ||||| Sbjct 202765 GTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTT 202706 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | || ||| || || | ||||| Sbjct 202705 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCAGAGGACTCGACCTCAAGGGTGAT 202646 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAA 133652 ||| ||||| ||||| || || |||||| Sbjct 202645 GGTCTTGCCCGTCAGGGTCTTCACGAAA 202618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417428139920