Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq516 125 7e-24 seq380 89.7 5e-13 >seq516 Length=1641395 Score = 125 bits (138), Expect = 7e-24 Identities = 965/1525 (63%), Gaps = 69/1525 (5%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || |||||||| ||||| ||||| | | || | ||| ||| | || Sbjct 1415613 TTGACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGTTGGAGGTGTACGGT 1415672 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || ||||||| | ||| | || || | ||| | || ||||||||| || || Sbjct 1415673 TCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAGGCATGGGGGCAACA 1415732 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || | ||||| | ||| | ||||||| | | ||||||||| Sbjct 1415733 AGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTCCTTCAGCGAGTCCCAGTCCCAT 1415792 Query 147073 A--TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC--TCGACTGGCGGG 147128 | ||| || ||| |||| ||||||||| ||||||||| | || | || | | Sbjct 1415793 AAGTCG--GACGGCTTCACTCCCCACATGTCATACTGGAGCTCGCCCTTGGAGATAGGCG 1415850 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATT-CACAG-CTTGCCTCG 147186 | || || | | |||| | || || || |||| | ||| | | || || Sbjct 1415851 AA--CCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCTGCACCGACATGG-TC- 1415906 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 || || | | ||| ||||| ||| ||| | ||| || || || || || | | Sbjct 1415907 AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCCTCAGGGGAC 1415966 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| | |||| ||||||| || || ||||| || | ||| |||| ||| | ||||||| Sbjct 1415967 TCGAAGGGCAGACGCAGAGCCAAGAAAGCATCAGCAAGACCTTGGACACCAAGGCCGATA 1416026 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTATGGGATAGTGGTTGCGATCAA 147364 || || || ||||||| | || || || | || ||||||||| ||||| Sbjct 1416027 GGGCGGTGACGCATGTTGCTGT--TACGAGCCTCCGGAACAGGGTAGTGGTTGACATCAA 1416084 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCAT 147424 | ||| |||| ||||| || || ||||| | || | | ||| |||| ||| || | Sbjct 1416085 TGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTCATGGAGCTTCTGGAAGTCGT 1416144 Query 147425 AAG---TCCCGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAG 147480 | | || ||| | | | || | ||| || || ||||| || |||| ||||| Sbjct 1416145 ATGCACTCTCGTTGTAGTCGACAAATGCA--GG--CAGGGCGAGCGAGGCCAAGTTGCAA 1416200 Query 147481 ACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTT 147539 || || ||| || |||| ||| ||||| | ||| || | |||||| ||| | ||| Sbjct 1416201 ACAGCGACCTCGTCAGGCG-CGCAGTACTCAATGATCTCAGTGCACAGATTG--GAATTG 1416257 Query 147540 T--ATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCG-TCTTTGAAGAGCAT 147596 ||| || | || | ||| ||||| || || ||| || | || || | ||||| Sbjct 1416258 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGG-CGTGATCCTTATAAAGCAT 1416316 Query 147597 GTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGCGC 147653 | |||| || |||||| || | || | || | ||| || | || || Sbjct 1416317 GAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGC---TTTTGAGC 1416373 Query 147654 TCGCA----CCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAA 147709 | | || ||| | ||||||| |||||| ||| ||||| ||||| Sbjct 1416374 CTTTAGGGTCTTGCGGCCCTT----GCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAA 1416429 Query 147710 ACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACA 147769 |||| ||||| ||||| |||||||||||||| |||| | |||||||| |||| |||| Sbjct 1416430 ACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACT 1416489 Query 147770 TGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGAT 147829 | | | | | || | ||| || ||||| || | ||| || || | |||| Sbjct 1416490 CGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGAT 1416549 Query 147830 CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTC--AAAT-TAAGCACGCTATAGA 147886 |||| || ||||| ||| ||| || | | || ||| || | | | | Sbjct 1416550 CGCGGGCACGAACCTCCTCTTTGCCGTGGTT--CTTGCGGAGATCCAAGAACTCGA-AAA 1416606 Query 147887 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCT 147943 |||||||||||||| || | |||| ||| | || || ||| || || |||| Sbjct 1416607 CATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCT 1416666 Query 147944 GGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAG 148003 ||||||| | ||| | ||||||| || || || | |||||| | ||| | | | Sbjct 1416667 GGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGG 1416726 Query 148004 TGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAA 148063 |||| |||||| ||| | ||| || || | ||| ||||| | ||||| Sbjct 1416727 TGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAA 1416786 Query 148064 TGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCC----CAATGTCGTGTAGATGCC 148118 ||||||| ||| | |||||| || || ||| || | | |||| ||||||||| Sbjct 1416787 TGCCGCCAGCCAT-CTTTGAGAT--CATGGCACACGTCTTGAGAGTGTC--GTAGATGCC 1416841 Query 148119 GTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGT 148178 |||||| ||| | || | | | | | || || ||| ||| ||| | | || Sbjct 1416842 TTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGT 1416901 Query 148179 TCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTT--TTGACTCATCATGCGA 148236 || || ||| || |||||| ||||| || || || || |||| ||||| | Sbjct 1416902 ACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTGA--CATCAAGTTG 1416959 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || ||||| || || || | || ||| || || || | || || ||||||| | Sbjct 1416960 TAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATC 1417019 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||| |||| ||||| | | || | |||||| || ||| | || ||| Sbjct 1417020 ATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGCTTGAGGAGGTATGACCTCTCAAGG 1417079 Query 148357 GTTTTGTAACCAAAGTACTTGTAAT 148381 || ||| | |||||||| | ||||| Sbjct 1417080 GTCTTGAAGCCAAAGTATTGGTAAT 1417104 >seq380 Length=739652 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || || | ||| | ||| | | |||| || || ||||||||||||||||||| || Sbjct 523842 ACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGT 523783 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || | ||| ||||| | | |||| ||||| || || || || || || || Sbjct 523782 GCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACC 523723 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || |||| | || | || || | || ||| || || | Sbjct 523722 CTCCTTGTCTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAA 523663 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || ||||| ||||| || | ||| || ||||| Sbjct 523662 CGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476607875636880