Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq289 111 2e-19 >seq289 Length=429572 Score = 111 bits (122), Expect = 2e-19 Identities = 199/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 147106 ACGTAAAACTG-GCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGG 147164 ||||| ||||| ||| | |||||||| |||||||| ||||| || || ||||| Sbjct 229972 ACGTAGAACTGCGCAAAC-ATGTGGCAGGGCGGCAGGGCCATCTTCTTAAGATCGGCGGG 229914 Query 147165 GTTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAAC 147224 |||||| || || | | || | | | ||||| |||| | || | ||| || Sbjct 229913 GTTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTTGTCTTGAGCTTGTGGATGAC 229854 Query 147225 CCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGC 147284 | || ||||| |||||||||||| |||| |||| | |||| |||||| ||| Sbjct 229853 CTCGGCGAGTTGGTCGACGCCCTGGCCCGTATAGTCTGTCTTGGAGTCGACGTACTCGGC 229794 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 ||||| || | ||| |||||||||||||| || || |||||||| | | ||| || Sbjct 229793 GCCAAAATGTCGCCATTGGAAGCCGTACACAGGACCGAGGTCGCCAACTTCGCGGTGGGA 229734 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGAT 147392 || ||| | | | ||| |||||| | || |||| |||||||||| Sbjct 229733 GAGGCCGACGCTGTCGAGGAACTCGCGCGAGCCGTTTCCGTCCCAGAT 229686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583483930171200