Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq449 158 2e-32 seq516 145 1e-28 seq400 100 4e-15 >seq449 Length=641369 Score = 158 bits (174), Expect = 2e-32 Identities = 241/336 (72%), Gaps = 7/336 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| |||||||| || ||||| ||||||||| | || | Sbjct 272718 GATCTGGCAAATGTAC-AAGAAGGCTGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATC 272660 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGA-GCGCCAT--TTCATCA 1455891 | | ||| | ||||| || | | || || | | || |||||| Sbjct 272659 TGTCCAAGGACCTCCACGACTGGAACAACAAGATCAATGATGATGAGAAATACTTCATCT 272600 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| | || ||||| || |||||| ||| ||||| || ||||||||| | || Sbjct 272599 CTCACATTCTTGCCTTCTT-CGCCGCTTCCGACGGCATTGTCAACGAGAACCTTGTCGAG 272541 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | |||||||||| | |||||||| |||| || ||||| ||||||||| Sbjct 272540 CGCTTCAGTGGAGAGGTCCAAGTTCCAGAGGCCCGTTGCTTCTACGGCTTCCAGATCATG 272481 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || |||||||||||||| |||||||| ||||| |||||||||||| ||||||| || Sbjct 272480 ATGGAGAACATCCACTCTGAGACCTACTCTCTCCTTATCGACACCTACATCAAGGAGCCC 272421 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACAC 1456106 | | || | ||| ||||||| ||||| ||||| Sbjct 272420 GCCCAG-CGCACCTACCTCTTCAATGCCATTGACAC 272386 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 || || ||||| || ||| |||| ||| | ||||| | | |||| | ||||| || Sbjct 272051 ATTATTGTCGACGCTGTCAAGATTGAGCAGGAGTTCTTGACCGAGGCTCTGCCCTGCGCT 271992 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| | | | | ||| |||||||| || || || || ||||| | Sbjct 271991 CTTCTCGGCATGAACTCGAACT-TGATGAAGCAGTACATCGAGTTC-GTTGCGGACCGTC 271934 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || || ||| | | ||| |||| | | ||||||| ||| | ||| Sbjct 271933 TGCTTGTTGCCCTGGGCAACA-ACAAGGTCTACAAGTCTACCAACCCCTTCGACTTCATG 271875 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || | || ||| ||| Sbjct 271874 GAGAACATCTCCCTCGGAGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAG 271815 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 271814 AAGGCCGGTGTCA 271802 Score = 91.5 bits (100), Expect = 2e-12 Identities = 120/159 (75%), Gaps = 13/159 (8%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCG 1456179 || |||||||||||||| | ||||||||| || || || || || ||||||| Sbjct 272312 AAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACCAGAAG----TCCAC-CTTTGCCC 272258 Query 1456180 AGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT-TTTCTCGG-GCAGTTTCTGCGC 1456236 |||| || || | |||||| || || ||||| ||||| ||| ||| || | || | Sbjct 272257 AGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGTGCCTTCGCTTC-- 272200 Query 1456237 CATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| ||||| ||||||||||| |||||||||||||| Sbjct 272199 CATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCT 272161 >seq516 Length=1641395 Score = 145 bits (160), Expect = 1e-28 Identities = 336/503 (67%), Gaps = 19/503 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| ||||| | ||||| | | | ||| ||||| ||| |||||| Sbjct 1417150 CACAAGGAGGAGTTCGACTCCGCCATTGTCTATGACCGTGACTTCAATTACCAATACTTT 1417091 Query 259742 GGTCTGGCGACC-TTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | |||| ||| | |||| ||||| ||| || || | ||| |||| | Sbjct 1417090 GGCTTCAAGACCCTTGAGA-GGTCATACCTCCTCAAGCTGGACGGGAAGATCGCCGAGAG 1417032 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| |||||||||| || | || | ||| ||||| Sbjct 1417031 ACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGG------------GACAA 1416984 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCAG 259919 | | |||| ||| ||| |||||| | ||||| |||| ||| |||||| | Sbjct 1416983 CG---TTGAGCGCGTCATCGAGACCTACAACTTGATGTCA-AGCAAGTTTTTCACCCACG 1416928 Query 259920 CGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGT 259979 | | ||||| || || || ||||| || || | | || || || ||||| || Sbjct 1416927 CCTCTCCCACACTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCTTG 1416868 Query 259980 TGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCA 260039 | |||||||||| || || ||||| |||||||| ||||| |||||| ||| || | | Sbjct 1416867 TCGACATGAAGGAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCATGA 1416808 Query 260040 TCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCT 260099 |||| ||| ||| |||||||| || | || ||| | ||||| | ||| | | Sbjct 1416807 TCTCAAAGATGGCTGGCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACTGGCTCGT 1416748 Query 260100 ACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACG 260159 || | || |||||||| ||| |||||||| | | ||||||||||| ||||| ||| Sbjct 1416747 ACATCGCCGGCACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCAACA 1416688 Query 260160 ACACGGCGCGCTACGTCGACCAG 260182 |||| || ||||||||||||||| Sbjct 1416687 ACACCGCTCGCTACGTCGACCAG 1416665 >seq400 Length=1139448 Score = 100 bits (110), Expect = 4e-15 Identities = 113/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 |||||| ||||||| |||||||||||| |||| | ||||||||| |||| || | ||| Sbjct 50125 GGCGCCATCGGTGCCCGCACCACCGAGTCCCAGCTCCACCGCGAGCTGGCCTCCGGCCTG 50066 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 50065 TCCTTCCCCGTCGGCTTCAAGAACGGCACCGACGGCAACCTCGGCGTC-GCCATCGACGC 50007 Query 165887 CGTGCGCACTGCCGCCCAGCCACACACC 165914 | | || | |||||| |||| |||| Sbjct 50006 CATCGGCGCCGCCGCC--GCCAAGCACC 49981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177757379874396