Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq547 122 8e-23 seq380 114 1e-20 seq487 111 1e-19 >seq547 Length=620828 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || |||| || |||||||| || || || Sbjct 191396 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 191455 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | || | || |||||||||| |||||| ||| | | | Sbjct 191456 GATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 191515 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| || |||||||| | ||||| || |||||||| | || ||||| Sbjct 191516 GTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTCTTACCCGTAAGGGTCTTCAC 191575 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 191576 GAAGATCTGCAT 191587 >seq380 Length=739652 Score = 114 bits (126), Expect = 1e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || || | ||||||||| || | |||| |||||| |||||||||||||||| | Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || || || |||| |||||||||||| | ||| Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 35630 ACGCTCTCCTTGTCCATGATCTT 35652 | || |||||||||| |||||| Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTT 523249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| ||| || || || | || |||| ||||||||| ||||| Sbjct 523811 TCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAG 523752 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | || | | ||||||||| ||||| ||||| ||| Sbjct 523751 ATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCA-CGTT 523693 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| ||| || ||||||| ||| ||||| || || || | ||| || || Sbjct 523692 GTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGAC 523633 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 523632 GAAGATTTGCAT 523621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| | || || | || || |||||||| || || || Sbjct 523076 CTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAA 523017 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| || |||||||||| |||||| ||| | | | Sbjct 523016 AATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATT 522957 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | |||||| || || ||||| | ||||| || || || || Sbjct 522956 GTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 522909 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || || || | || |||| ||||| || || || Sbjct 523583 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAG 523524 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||||||||| | |||| | |||||| ||| ||||| ||| | | | Sbjct 523523 ATCAATCGCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTGACATTG 523464 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||| || || || ||||| | ||||| || || || || | || || || Sbjct 523463 TCGATCGTATCTGAAGACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACG 523404 Query 35726 AATATCTGCAT-TCTGTGCGCACACACACCAC 35756 || |||||||| || ||||| || || ||| Sbjct 523403 AAAATCTGCATACCTCCGCGCAAACGCAACAC 523372 >seq487 Length=725459 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || |||| || |||||||| || || || | Sbjct 202799 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGA 202740 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | ||||| || |||||||||| |||||| ||| | | | Sbjct 202739 TCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 202680 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | |||||| || || ||||| | ||||| || || ||||||| || ||||| | Sbjct 202679 CGATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 202620 Query 35727 A 35727 | Sbjct 202619 A 202619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790455714640