Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq380 93.3 4e-14 >seq380 Length=739652 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/238 (69%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| || || || || || | || | ||| | || || || || ||||| ||||| Sbjct 523854 TTATTGACCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTA 523795 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 |||||||| |||| | || || | ||| ||||| || | || ||||| || || || Sbjct 523794 GTCGCTCAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTC 523735 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | |||||| || || |||||| |||| | | || | ||||||| | Sbjct 523734 GGGGGGGATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGA 523675 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || | || || | ||||| || ||||| || || |||||||||||| || Sbjct 523674 CTCGACCTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATACCT 523617 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||||||||| ||||| ||||| || | |||||| || || ||||| ||||| ||| | Sbjct 523391 CCTCCGCGCAAACGCAACACCAAGTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGAC 523332 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || ||||| || || || ||| |||| || ||||| || || || || Sbjct 523331 AAAGTACGACCATCCTCGAGTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGA 523272 Query 27141 ACACCCTCTTTATCGGCGATCTTG 27164 | ||||| || || ||||||| Sbjct 523271 ATGCCCTCCTTGTCCTGGATCTTG 523248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931510180496