Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq449 116 1e-20 seq516 109 2e-18 >seq449 Length=641369 Score = 116 bits (128), Expect = 1e-20 Identities = 128/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||| | | |||| ||||| || ||||||| || || || | || |||||||| | Sbjct 272268 CACCTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCGGT-G 272210 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || || |||||||||||| |||| ||||| || || |||| ||||||||| || || Sbjct 272209 CCTTCGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCTCTA 272150 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| || ||| ||| ||||||||| | || |||||||||||| || Sbjct 272149 ACGAGCTTATCTCTCGTGACGAGGGTCTCCACACCGACTTCGCCTGCCT 272101 >seq516 Length=1641395 Score = 109 bits (120), Expect = 2e-18 Identities = 218/317 (69%), Gaps = 12/317 (4%) Strand=Plus/Minus Query 254978 ATACCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAA 255037 || || ||| | || || ||||||||| |||||||||||||| || || ||| ||| Sbjct 1416712 ATCCCCATGCTTCGAGTTTTCAACAACACCGCTCGCTACGTCGACCAGGGTGGCAACAAG 1416653 Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTA 255097 ||||| || || ||| ||||||| || ||||| ||||||||||| || ||| || Sbjct 1416652 CGCCCCGGCGCCTTCGCCATCTATCTCGAGCCCTGGCACGCCGATGTTTTCGAGTTCTT- 1416594 Query 255098 CTGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCT 255154 | | |||| ||||| ||||| |||||| | |||||||| ||| | || Sbjct 1416593 -GGATCTCCG-CAAGAACCACGGCAAAGAGGAGGTTCGTGCCCGCGATCTCTTCCTTGCC 1416536 Query 255155 GTCTGGTGCTGCGATCTGTTTATGCGACGCGTGG-AACGA--GACGAGACCTGGAGCCTC 255211 ||||| |||||| || ||| | |||| || || | |||| |||| ||| Sbjct 1416535 CTCTGGATTCCCGATCTCTTCATGAAGAGGGTGGAAAAGAATGGCGAG---TGGACGCTC 1416479 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTG 255271 |||||||||||| | ||||| || | ||||| | || || |||||||| || Sbjct 1416478 ATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTGCTATGGCGAAGAGTTTGAGGCCTTG 1416419 Query 255272 TATCTGGAGTACGAGCG 255288 ||| | |||||||||| Sbjct 1416418 TATGAGAAGTACGAGCG 1416402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588324644390310