Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq516 223 4e-53 seq449 89.7 6e-13 >seq516 Length=1641395 Score = 223 bits (246), Expect = 4e-53 Identities = 947/1468 (65%), Gaps = 45/1468 (3%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||||||||| | ||||| ||||| ||||| ||||| | |||| ||| || | |||| Sbjct 1415650 GGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGC 1415709 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||| || ||||| || || | | |||||||| || | ||| | || | |||| | | Sbjct 1415710 TGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCT 1415769 Query 110826 CCTTGAGAACATCCCAGTCGTA---GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 |||| || |||||||| | || | | || ||||| | ||||||||||| ||| Sbjct 1415770 CCTTCAGCGAGTCCCAGTCCCATAAGTCGGAC--GGCTTCAC-TCCCCACATGTCATACT 1415826 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | ||| | || | ||| || |||||||| | | || |||| ||| | | | | Sbjct 1415827 GGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGG 1415886 Query 110943 CCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 ||| | ||| | || || | ||||| || ||||| || ||||| ||| Sbjct 1415887 CCAGCTGCACCGACATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTA 1415945 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGA 111059 | || || ||| || || || | | || ||| | || ||| |||| || | Sbjct 1415946 AGATCGCGAGCCTCAGGGGACTCGAAGG-GCAGACGCAGAGCCAAGAAAG-CATCAGCAA 1416003 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 ||||||| ||||| | || ||||| | ||| ||||| || || || || | || Sbjct 1416004 GACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGCCTCCGGAA 1416063 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | || || || ||||||| | ||| || || ||||| || ||| | | Sbjct 1416064 CAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCT 1416123 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGG 111236 |||| || || | | || | ||| | |||| | | | ||| | || |||| Sbjct 1416124 CATGGAGCTTCTGGAAGTCGTA--TGC-ACTCTCGTTGTAGTCGACAAATGCAGGCAGGG 1416180 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 ||| || ||||| ||||||||||| ||| || | |||||| | || || | Sbjct 1416181 CGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAG 1416240 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || | |||||| | || || || | ||||| ||||| ||||| |||| Sbjct 1416241 TGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGT 1416300 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||||| || |||||| | || | || ||||| ||||||| | |||||| || | || Sbjct 1416301 GATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACC 1416360 Query 111417 AAA-CATCGGCGGCTGGTACAATGGCGTTG--GCCCGTCCCTCCGC-CTCGTACTTTGTG 111472 | | | | | | || | || ||| |||| | || ||| ||||||||| Sbjct 1416361 AGAGCTTTTGAGCCTTT----AGGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCA 1416416 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 || | ||| |||||||| || || | || ||||| || || || || || ||||| Sbjct 1416417 TACAAGGCCTCAAACTCTTCGCC-ATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACA 1416475 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 | || | ||| | ||| | || |||| ||||||||| || || |||||||| || Sbjct 1416476 CATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAG 1416535 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || |||||||| | ||| |||| || | || ||||| || | || | Sbjct 1416536 GGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAA 1416595 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707 |||||| | | ||| |||||||| ||||| ||||||| |||| | || | | Sbjct 1416596 GAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTT 1416655 Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | ||| | | || | || ||||| || ||| ||| || || |||||||| || || | Sbjct 1416656 GTTGCC-ACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGA 1416714 Query 111768 TACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATG 111825 ||| | || ||||| || || ||| |||||| | | || | | || Sbjct 1416715 CACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC--AGTAGCGCGAATGCGGTG 1416772 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 || || ||| ||||| || |||||| ||||||||| |||||| | | ||||| | Sbjct 1416773 GACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTC 1416832 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||||| || | ||| ||||||||||| || ||| |||||||||| |||| || | Sbjct 1416833 GTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGC 1416892 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003 || ||||| || ||||| || || || | ||||| ||| | | |||| ||| Sbjct 1416893 CTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGA--AAAACTTGCTTGAC 1416950 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 ||| || ||| ||||| | ||| |||| || ||||| ||| |||| || || Sbjct 1416951 ATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACA 1417010 Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGC 112121 ||||||| ||||| ||| || | || || | || || ||| |||| || || Sbjct 1417011 CGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGC--TTGAGGAGGTATG 1417068 Query 112122 TCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | |||||||||| |||| |||||||| Sbjct 1417069 ACCTCTCAAGGGTCTTGAAGCCAAAGTA 1417096 >seq449 Length=641369 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || || || ||||| || || ||||| ||||| ||||||||||| Sbjct 272118 GTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGACC 272177 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||| ||| | || | ||| | ||| |||||||||||||| || Sbjct 272178 GCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACGGC 272237 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||||| |||| || || | ||| |||| Sbjct 272238 AGCAAAGGCAACTAGACGCTGGGCAAAGG 272266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027619476800