Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq516 223 4e-53
seq449 89.7 6e-13
>seq516
Length=1641395
Score = 223 bits (246), Expect = 4e-53
Identities = 947/1468 (65%), Gaps = 45/1468 (3%)
Strand=Plus/Plus
Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765
|||||||||| | ||||| ||||| ||||| ||||| | |||| ||| || | ||||
Sbjct 1415650 GGTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGC 1415709
Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825
||| || ||||| || || | | |||||||| || | ||| | || | |||| | |
Sbjct 1415710 TGGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCT 1415769
Query 110826 CCTTGAGAACATCCCAGTCGTA---GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882
|||| || |||||||| | || | | || ||||| | ||||||||||| |||
Sbjct 1415770 CCTTCAGCGAGTCCCAGTCCCATAAGTCGGAC--GGCTTCAC-TCCCCACATGTCATACT 1415826
Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942
| ||| | || | ||| || |||||||| | | || |||| ||| | | | |
Sbjct 1415827 GGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGG 1415886
Query 110943 CCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001
||| | ||| | || || | ||||| || ||||| || ||||| |||
Sbjct 1415887 CCAGCTGCACCGACATGGTC-AGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTA 1415945
Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGA 111059
| || || ||| || || || | | || ||| | || ||| |||| || |
Sbjct 1415946 AGATCGCGAGCCTCAGGGGACTCGAAGG-GCAGACGCAGAGCCAAGAAAG-CATCAGCAA 1416003
Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119
||||||| ||||| | || ||||| | ||| ||||| || || || || | ||
Sbjct 1416004 GACCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGCCTCCGGAA 1416063
Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179
| || || || ||||||| | ||| || || ||||| || ||| | |
Sbjct 1416064 CAGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCT 1416123
Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG---ACATACTTTGGAAGGG 111236
|||| || || | | || | ||| | |||| | | | ||| | || ||||
Sbjct 1416124 CATGGAGCTTCTGGAAGTCGTA--TGC-ACTCTCGTTGTAGTCGACAAATGCAGGCAGGG 1416180
Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296
||| || ||||| ||||||||||| ||| || | |||||| | || || |
Sbjct 1416181 CGAGCGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAG 1416240
Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356
| || | |||||| | || || || | ||||| ||||| ||||| ||||
Sbjct 1416241 TGCACAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCGT 1416300
Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416
|||||| || |||||| | || | || ||||| ||||||| | |||||| || | ||
Sbjct 1416301 GATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACC 1416360
Query 111417 AAA-CATCGGCGGCTGGTACAATGGCGTTG--GCCCGTCCCTCCGC-CTCGTACTTTGTG 111472
| | | | | | || | || ||| |||| | || ||| |||||||||
Sbjct 1416361 AGAGCTTTTGAGCCTTT----AGGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCA 1416416
Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACA 111531
|| | ||| |||||||| || || | || ||||| || || || || || |||||
Sbjct 1416417 TACAAGGCCTCAAACTCTTCGCC-ATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACA 1416475
Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591
| || | ||| | ||| | || |||| ||||||||| || || |||||||| ||
Sbjct 1416476 CATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAG 1416535
Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651
|| |||||||| | ||| |||| || | || ||||| || | || |
Sbjct 1416536 GGCAAGGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAA 1416595
Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTC 111707
|||||| | | ||| |||||||| ||||| ||||||| |||| | || | |
Sbjct 1416596 GAACTCGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTT 1416655
Query 111708 GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767
| ||| | | || | || ||||| || ||| ||| || || |||||||| || || |
Sbjct 1416656 GTTGCC-ACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGA 1416714
Query 111768 TACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTCACATCATG 111825
||| | || ||||| || || ||| |||||| | | || | | ||
Sbjct 1416715 CACCGTTGGAGGTGCCATTGGTGCCGGCGATGTACGAGCC--AGTAGCGCGAATGCGGTG 1416772
Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885
|| || ||| ||||| || |||||| ||||||||| |||||| | | ||||| |
Sbjct 1416773 GACGTTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTC 1416832
Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945
||||| || | ||| ||||||||||| || ||| |||||||||| |||| || |
Sbjct 1416833 GTAGATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGC 1416892
Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGAC 112003
|| ||||| || ||||| || || || | ||||| ||| | | |||| |||
Sbjct 1416893 CTGGGGGGTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGA--AAAACTTGCTTGAC 1416950
Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063
||| || ||| ||||| | ||| |||| || ||||| ||| |||| || ||
Sbjct 1416951 ATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACA 1417010
Query 112064 CGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA--AGATAGC 112121
||||||| ||||| ||| || | || || | || || ||| |||| || ||
Sbjct 1417011 CGCATGATCATGTGCTGGGGTCTCTCGGCGATCTTCCCGTCCAGC--TTGAGGAGGTATG 1417068
Query 112122 TCTTCTCAAGGGTTTTGAGACCAAAGTA 112149
| |||||||||| |||| ||||||||
Sbjct 1417069 ACCTCTCAAGGGTCTTGAAGCCAAAGTA 1417096
>seq449
Length=641369
Score = 89.7 bits (98), Expect = 6e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729
|||||||||||| || || || ||||| || || ||||| ||||| |||||||||||
Sbjct 272118 GTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGCATGAGACC 272177
Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789
|||||||||| ||| | || | ||| | ||| |||||||||||||| ||
Sbjct 272178 GCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCCTCAACGGC 272237
Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818
||||| |||| || || | ||| ||||
Sbjct 272238 AGCAAAGGCAACTAGACGCTGGGCAAAGG 272266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628027619476800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |