Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq449 129 7e-25 seq384 91.5 2e-13 >seq449 Length=641369 Score = 129 bits (142), Expect = 7e-25 Identities = 305/457 (67%), Gaps = 18/457 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 271819 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATG 271878 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGCTGGC-ACTCCAATCTGTTTGAGG 129841 || || || ||||| | || || | | ||| || | | ||| || Sbjct 271879 AAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACA------AGC 271932 Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901 ||||| |||| ||| |||| ||||||| |||| | |||||||| |||| || Sbjct 271933 AGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAGA 271992 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || || || || || | |||| ||| |||||| | ||||| || | ||| Sbjct 271993 GCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAATG 272052 Query 129962 GCGTGAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 130018 | | |||| || | ||| ||| | | ||| | || ||||| || ||| Sbjct 272053 TCCTCAATGACCTGCTTGCTAGGGCGGTTCTTGAGGTGAGAAAACAAGAGG--CA-GGCG 272109 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||||||||||||||| ||||| || || || ||||| |||||| ||| Sbjct 272110 AAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGC 272169 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 |||||||| |||||||||| |||||| || | | || | || |||||||| ||| Sbjct 272170 ATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCC 272229 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || || || |||| ||||||| ||||||| Sbjct 272230 TCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGG 272266 >seq384 Length=763591 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||| | |||||| ||||| |||||||| | ||| || || || | || || | Sbjct 74239 ACCAATGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGC 74180 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 14353 |||| ||||||||||| | ||||||||| ||||||||||| ||||| | || | Sbjct 74179 GAAGAGGTCTCGCACTCTGGATGGACCGACACCAACAAACATCTCAACAAACTCGGAACC 74120 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 || || | || |||||| ||| || || || || | || |||||| || ||| Sbjct 74119 GCTGACGCT--GAAGAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTC 74062 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || || || || ||||| | |||||| || |||||| ||||||| Sbjct 74061 TTACCGGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACC 74009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430886414480