Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq449 129 7e-25
seq384 91.5 2e-13
>seq449
Length=641369
Score = 129 bits (142), Expect = 7e-25
Identities = 305/457 (67%), Gaps = 18/457 (4%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| |||| ||||||||||||||||| ||||| || | | | ||| ||||||||
Sbjct 271819 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCTCCGAGGGAGATGTTCTCCATG 271878
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGCTGGC-ACTCCAATCTGTTTGAGG 129841
|| || || ||||| | || || | | ||| || | | ||| ||
Sbjct 271879 AAGTCGAAGGGGTTGGTAGACTTGTAGACCTTGTTGTTGCCCAGGGCAACA------AGC 271932
Query 129842 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGG 129901
||||| |||| ||| |||| ||||||| |||| | |||||||| |||| ||
Sbjct 271933 AGACGGTCCGCAACGAACTCGATGTACTGCTTCATCAAGTTCGAGTTCATGCCGAGAAGA 271992
Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961
|| || || || || | |||| ||| |||||| | ||||| || | |||
Sbjct 271993 GCGCAGGGCAGAGCCTCGGTCAAGAACTCCTGCTCAATCTTGACAGCGTCGACAATAATG 272052
Query 129962 GCGTGAATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 130018
| | |||| || | ||| ||| | | ||| | || ||||| || |||
Sbjct 272053 TCCTCAATGACCTGCTTGCTAGGGCGGTTCTTGAGGTGAGAAAACAAGAGG--CA-GGCG 272109
Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078
|| || |||||||||||||||||| ||||| || || || ||||| |||||| |||
Sbjct 272110 AAGTCGGTGTGGAGACCCTCGTCACGAGAGATAAGCTCGTTAGAGAATGTCAGACCGGGC 272169
Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138
|||||||| |||||||||| |||||| || | | || | || |||||||| |||
Sbjct 272170 ATGAGACCGCGCTTCTTCAGCCAGAAGATGGAAGCGAAGGCACCGCTAAAGAAGATACCC 272229
Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| || || || |||| ||||||| |||||||
Sbjct 272230 TCAACGGCAGCAAAGGCAACTAGACGCTGGGCAAAGG 272266
>seq384
Length=763591
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295
||| | |||||| ||||| |||||||| | ||| || || || | || || |
Sbjct 74239 ACCAATGGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGC 74180
Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 14353
|||| ||||||||||| | ||||||||| ||||||||||| ||||| | || |
Sbjct 74179 GAAGAGGTCTCGCACTCTGGATGGACCGACACCAACAAACATCTCAACAAACTCGGAACC 74120
Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413
|| || | || |||||| ||| || || || || | || |||||| || |||
Sbjct 74119 GCTGACGCT--GAAGAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTC 74062
Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466
|| || || || || || ||||| | |||||| || |||||| |||||||
Sbjct 74061 TTACCGGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACC 74009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430886414480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |