Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq516 253 2e-62 seq449 132 6e-26 seq384 84.2 3e-11 >seq516 Length=1641395 Score = 253 bits (280), Expect = 2e-62 Identities = 912/1399 (65%), Gaps = 43/1399 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || ||||||| ||||| || |||| ||| Sbjct 1417030 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGGGACAACGTTGAGCGCGTC 1416971 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || |||||| |||| | | ||| ||||| | || || || | Sbjct 1416970 ATCGAGACCTACAACTTGATGTCAAGCAAGTTTT--TCACCCACGCCTCTCCCACACTGT 1416913 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | ||| |||| |||||||||| ||| || ||||||| Sbjct 1416912 TCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCTTGTCGACATGAAGGAGG 1416853 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | || ||||| | ||||| | | |||||| ||||||||| ||||| Sbjct 1416852 ACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCATGATCTCAAAGATGGCTG 1416793 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | || ||||| ||| || |||| | | || | | |||||| ||| || || Sbjct 1416792 GCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACTGG--CTCGTACATCGCCGGCAC 1416735 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||||| || | ||| | || || |||||||| || || ||| ||| || ||||| Sbjct 1416734 CAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCAACAACACCGCTCGCTA 1416675 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 || | || | ||| | | | | || | |||| ||||||| ||||| |||| Sbjct 1416674 CGTCGACCAGGGTGG-CAACAAGCGCCCCGGCGCCTTCGCCATCTATCTCGAGCCCTGGC 1416616 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| | | |||||| | || | || ||||| || | ||||||| || Sbjct 1416615 ACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGTG 1416556 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 ||||||||||||| || ||||||||||| ||||||||||||||||| || || ||| Sbjct 1416555 CCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGTGGAAAAGA 1416496 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 |||| | ||| | ||| | ||||| || || || || || |||| ||| | || Sbjct 1416495 ATGGCGAGTGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTGCTAT-GGC 1416437 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG-TCGGGCGACTGCGACGGT 104871 || |||||||| ||| | || ||||||||| || || |||| | ||| | Sbjct 1416436 GAAGAGTTTGAGGCCTTGTATGAGAAGTACGAGCGCGAGGGCAAGGGCCGC-AAGACCCT 1416378 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | | ||| | || |||||| || | || ||||||||||||| || | Sbjct 1416377 AAAGGCTCAAAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAGACTGGTAACCCGTT 1416318 Query 104932 CATGCTTTACAAAG---ACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 ||||||||| || | ||||| |||| ||||| || || ||||| | ||| || Sbjct 1416317 CATGCTTTATAAGGATCACGCC---AACCGCAAGAGCAACCAGAAGAACCTCGGTACCAT 1416261 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | | ||||||||| || || || ||| | || | | || ||| ||||| Sbjct 1416260 CCGCAATTCCAATCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGACGAGGTCGCTGT 1416201 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 || ||| | || || |||| || || | ||| || | || || | | ||| | Sbjct 1416200 TTGCAACTTGGCCTCGCTCGCCCTGCCTGCATTTGTCGACTACAACGAGAGTG-CATACG 1416142 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || ||||| || || | ||| ||||| ||||| | |||| Sbjct 1416141 ACTTCCAGAAGCTCCATGAGACCACCCAGGTTGTTGTACGCAACCTGAACAGGATCATTG 1416082 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || || ||||| ||| | |||||||| || ||| | ||||| || || | Sbjct 1416081 ATGTCAACCACTACCCTGTTCCGGAGGCTCGTAACAGCAACATGCGTCACCGCCCTATCG 1416022 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCC 105286 | || ||||| || ||||| || |||| ||| | || || || | | || || ||| Sbjct 1416021 GCCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTG-CGTCTGCCCTTCGAGTCC 1415963 Query 105287 GACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAG 105346 || || || | ||| || || |||||||| || ||||| ||||| | Sbjct 1415962 CCTGAGGCTCGCGATCTTAATAAAAAGATCTTCGAGACCATCTACCACGCTGCTCT---G 1415906 Query 105347 GCGAGTTCAG---AGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC- 105402 | | || | || |||| ||| || ||| | || || | | |||||||| || Sbjct 1415905 ACCATGTCGGTGCAGCTGGCCAAGGAGGAGGGTACCTACGAGTCTTACGAGGGTTCGCCT 1415846 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCACT 105458 | || || | || | ||| || | ||| ||||||| | |||| | || | ||| | Sbjct 1415845 ATCTCCA-AGGGCGAGCTCCAGTATGACATGTGGGGA-GTGAAGCCGTCCGA-CTT--AT 1415791 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||||||| | || ||||| | |||| | || | ||| | || |||||||| || Sbjct 1415790 GGGACTGGGACTCGCTGAAGGAGCAGATCACGCAGCACGGTGTACGCAACAGTCTGCTTG 1415731 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | || || ||||| || ||| |||| | || ||| |||| | ||||| ||||| |||| Sbjct 1415730 TTGCCCCCATGCCTACTGCCAGCACCTCGCAGATCCTGGGCTACAATGAGTGCTTCGAAC 1415671 Query 105579 CCTACACGACGAACATCTA 105597 | ||||| | |||||||| Sbjct 1415670 CGTACACCTCCAACATCTA 1415652 >seq449 Length=641369 Score = 132 bits (146), Expect = 6e-26 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTT---GATACAAAGT 94789 ||||||| || |||| ||||| || || |||||| | |||||| | || |||| Sbjct 272329 CAGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCTCCGACCAGAAGT 272270 Query 94790 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 | ||||||| |||| || | || ||||| ||||||||||||||||| | Sbjct 272269 CCA---CCTTTGCCCAGCGTCTAGTTGCCTTTGCTGCCGTTGAGGGTATCTTCTTTAGCG 272213 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 || ||||| | || | ||||| |||||||| ||||||||||| ||||| |||| Sbjct 272212 GTGCCTTCGCTTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGCCCGGTCTGACATTCT 272153 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 | |||||||||||||||||||||||||| |||||| Sbjct 272152 CTAACGAGCTTATCTCTCGTGACGAGGGTCTCCAC 272118 >seq384 Length=763591 Score = 84.2 bits (92), Expect = 3e-11 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAG 9762 ||| || || || || ||||||| |||||| || || | |||||| | ||||| Sbjct 74233 GGCGTCGATTTCGTCGATGAAGATGATGCAGGGGGCGTTCTTGCGAGCCGTCGCGAAGAG 74174 Query 9763 ATCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--CGGCGGA 9819 || || || | | ||| || ||||||||||||||||| ||||| | | | || || Sbjct 74173 GTCTCGCACTCTGGATGGA-CCGACACCAACAAACATCTCAACAAACTCGGAACCGCTGA 74115 Query 9820 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 | || |||||| || || || || ||| | || |||||| || |||||||| Sbjct 74114 CGCT--GAAGAAGGGCACGCCGGACTCGCCAGCAGTAGCCTTGGCGAGCAGCGTCTTACC 74057 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 || || || ||| ||||||| |||||| || || |||||||| || Sbjct 74056 GGTTCCCGGAGGACCGGCGAGGATGGCACCGCGGGGGATCTTGGCACC 74009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583256731755920