Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq380 140 1e-27 seq516 131 5e-25 seq411 98.7 3e-15 >seq380 Length=739652 Score = 140 bits (154), Expect = 1e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| ||||| | | || || |||||||| || || || || || || || | Sbjct 523627 TTTGCATACCTCCACGGAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGGATGTTGT 523568 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| || | ||| ||||| || ||||| | || ||||| | Sbjct 523567 AGTCGGACAGAGTACGACCATCCTCCAATTGCTTTCCGGCGAAGATCAATCGCTGCTGGT 523508 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || ||||||||||| || | || ||||| || |||| ||| || | Sbjct 523507 CGGGGGGAATACCCTCCTTATCCTGAATCTTGGACTTGACATTGTCGATCGTATCTGAAG 523448 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| || | |||||| || || || || || || ||||||||||| Sbjct 523447 ACTCAACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 523393 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| |||||||| | ||||||||||| || || || || || ||||| || || || Sbjct 523848 ACCGCCACGTAAACGGAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCT 523789 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || | || || ||||||||||| ||||||||||| || || || Sbjct 523788 CAGAGTGCGGCCATCCTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGG 523729 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || || ||||| || | || || || ||||||| || || | || || Sbjct 523728 GATACCCTCCTTGTCTTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGAC 523669 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || | |||| ||||| || || || || || || || || ||||| Sbjct 523668 CTCCAACGTAATCGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 >seq516 Length=1641395 Score = 131 bits (144), Expect = 5e-25 Identities = 322/486 (66%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 349613 GTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGC 349672 || || ||||| || ||||| || || || |||||||| || || || || || || Sbjct 518454 GTCATCACTGTCCCTGCCTACTTCAACGACTCCCAGCGTCAGGCTACCAAGGACGCCGGT 518513 Query 349673 AGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCA 349732 |||||| || | || || || | || || || || ||||| ||||| || ||||| Sbjct 518514 CTCATTGCCGGTCTCAACGTCCTTCGTATCATCAACGAGCCCACCGCTGCCGCCATTGCC 518573 Query 349733 TATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGT 349792 || || || || || | | || || || |||| || || ||| | |||||| Sbjct 518574 TACGGTCTCGACAAGAAGGCCGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGT 518633 Query 349793 GGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACT 349852 ||||| || ||||| || || || || |||| ||||| || || || ||||| | || Sbjct 518634 GGTACCTTCGATGTCTCTCTCCTGACCATTGAGGAGGGTATCTTCGAGGTTAAGTCCACC 518693 Query 349853 GCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTT 349912 || ||||| || || | ||||| || || || || || |||||||| || || || Sbjct 518694 GCCGGTGACACCCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTCGTC 518753 Query 349913 AAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCG 349971 || || || ||||| ||||| || | || | | || || | || | ||||| Sbjct 518754 AACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGTCCGCCAACGCTCGCGCTCTTCGTCG 518812 Query 349972 CCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTAT 350031 || | || || || || ||||| ||||| || | || ||| | |||| || || || Sbjct 518813 TCTCCGCACCGCTTGCGAGCGTGCCAAGCGCACCCTGTCCTCTTCCGCCCAGACTTCCAT 518872 Query 350032 TGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTT 350091 || || || || || || || | ||||||| | || || || |||||||| || Sbjct 518873 CGAGATCGACTCCCTGTTCGAGGGTATTGATTTCTACACCTCCATCACCCGTGCTCGCTT 518932 Query 350092 TGAAGA 350097 || || Sbjct 518933 CGAGGA 518938 >seq411 Length=298490 Score = 98.7 bits (108), Expect = 3e-15 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || ||||| | || || ||| || || | |||||||||||||||||| ||||| Sbjct 22482 CGCGGGACACCGAGAGTGACGTTC---TTGGAAGAAACACCAGCAAAGTGGAAGGTATTC 22538 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||| || ||||| ||||| || || ||||||||||| Sbjct 22539 AGCGTCATCTGTGTAGCAGGCTCACCGATAGACTGAGCTGCGATGACACCAACCATTTCA 22598 Query 377578 CCAGGATTGACAATAGCC 377595 || ||| |||| | |||| Sbjct 22599 CCGGGACTGACGAAAGCC 22616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515243566878074