Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq516 473 1e-128
>seq516
Length=1641395
Score = 473 bits (524), Expect = 1e-128
Identities = 1168/1754 (67%), Gaps = 47/1754 (3%)
Strand=Plus/Plus
Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249
||||||| ||||||||||| ||||| || || |||||| ||| | |||||| ||
Sbjct 1415304 GTTCGCAGGTAGTACATGCCTGTCTTCAGGCCGAGCTTCCAACCGGCGAAGTGCATGCTG 1415363
Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309
| | |||| ||| |||||| || |||| |||||||| ||||| ||||||||||||
Sbjct 1415364 GTGATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGGGACTGCGACTGGTCGATG 1415423
Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369
| ||||| ||||| || ||||| | | || | | || | || ||||||| ||||
Sbjct 1415424 AAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGAGAGATTTCCCAGACGGTC 1415483
Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCGGCTCGC 78429
||| | ||||||| ||| || |||||| | | | | | | | | | | || |
Sbjct 1415484 TTGTACAGAGCCTTCACCTCGGCCGGGATGTTCGG-GATGTTCTGAACAGAACCGTTCTC 1415542
Query 78430 A-CAATTTCA---TTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGA- 78484
| || | ||||| || | ||| | |||| |||||| ||
Sbjct 1415543 GGCGATGATACGGTTCTTCATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAG 1415602
Query 78485 ---CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541
||||| |||| | | ||||||||||||||| |||||| |||||||||
Sbjct 1415603 AAGCCAGG----GGTTGACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGT 1415658
Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601
||| |||||||| ||||| ||| |||| |||| |||||| | ||| ||| || |
Sbjct 1415659 TGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAG 1415718
Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG- 78660
||||||| || || || ||| || || | ||| ||| | |||||| |||| ||
Sbjct 1415719 GCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTCCTTCAGCG 1415778
Query 78661 -----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715
| |||||| || || || | | ||||||||||| || || ||||
Sbjct 1415779 AGTCCCAGTCCCATAAGTCGGACGGCTTCACTCCCCACATGTCATACTGGAGCTCGCCCT 1415838
Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT- 78774
||| ||||| |||| | | | |||||| | |||||||||||||| || | |||
Sbjct 1415839 TGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCT-GCACC 1415897
Query 78775 GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834
||| | ||| || |||||||| | | ||||||||| || || || ||||| |||
Sbjct 1415898 GACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCC 1415957
Query 78835 TTGGTCTCGTCGAACGAAAG--GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892
| | ||||| | || || |||| || ||| |||| || || || ||||| |
Sbjct 1415958 TCAGGGGACTCGAAGGGCAGACGCAGAGC--CAAGAAAGCATCAGCAAGACCTTGGACAC 1416015
Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952
| | |||| || ||||| ||||||||||| || || ||| || ||||| ||
Sbjct 1416016 CAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGCCTCCGGAACAGGGTAGTGGT 1416075
Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGG 79012
| ||| |||| | ||||||||| || || ||| | || ||| | | ||
Sbjct 1416076 TGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTCATGGAGCTTCT 1416135
Query 79013 CGAAATCAAAATGATTTCCTTTGATG------AAAGTCGGTAGGCACAGCGATGCCAGGT 79066
||| || | | | | ||| | || | || ||| ||||| |||| ||
Sbjct 1416136 GGAAGTCGTATGCACTCTCGTTGTAGTCGACAAATGCAGGCAGGGCGAGCGAGGCCAAGT 1416195
Query 79067 TGCACACGGCCGTCTCGTCCGG-GCT-AGAAACCTCGATGATTTCTGTGCACAAATTAGA 79124
|||| || || |||||| || || || | ||| ||||| || ||||||| ||| ||
Sbjct 1416196 TGCAAACAGCGACCTCGTCAGGCGCGCAGTA--CTCAATGATCTCAGTGCACAGATTGGA 1416253
Query 79125 CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT---CCTTGTA 79181
|||||| |||| |||||||||||||||||| ||| ||||| |||| ||
Sbjct 1416254 ATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT---GGCGTGATCCTTATA 1416310
Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCG 79241
|||| |||| | || ||||| ||| || ||||| | | | ||||| | |
Sbjct 1416311 AAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTG 1416370
Query 79242 GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGA-CGTACGTCCGGTACAACTCGTTGA 79300
||| | ||| | | |||| ||| ||||| || ||||| | | |
Sbjct 1416371 AGCCTTTAGGGTCTTGCGGCCCTTGCCCTC-GCGCTCGTACTTCTCATACAAGGCCTCAA 1416429
Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360
| | || |||||| |||| ||||| |||||||||| || ||||| || ||| |
Sbjct 1416430 ACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACT 1416489
Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420
| | | ||| || ||| ||| ||||||||| || || ||||| ||||| |||||| |
Sbjct 1416490 CGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGAT 1416549
Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480
||||| ||| | |||||| | ||| |||||| || || || | || || | | |
Sbjct 1416550 CGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACAT 1416609
Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540
|||||||||| ||||| |||||||||||||| | || ||||||| ||| |||||||
Sbjct 1416610 CGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGT 1416669
Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600
|||||| || || ||||||||||||||||| |||||||| | || |||| || | ||
Sbjct 1416670 CGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGC 1416729
Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGC 79660
| || || ||| ||| | || | || |||||| | || || || ||||
Sbjct 1416730 CATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGC 1416789
Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720
| || | | ||| ||||| || ||| |||||| || ||||||||||| ||||| |
Sbjct 1416790 CGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGG 1416849
Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780
|||| |||||||| |||| |||||||| |||| || | | | ||||||||||
Sbjct 1416850 AGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGT 1416909
Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT--TTGGCTCATCAGATCGTACGTCTC 79838
|||| || || || | ||||| ||||| ||||| ||| ||||| | ||| |||||
Sbjct 1416910 TGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTG--ACATCAAGTTGTAGGTCTC 1416967
Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG 79898
|||||||| | || ||| || ||| ||||| || || ||||||| | || |||
Sbjct 1416968 GATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGTGCTG 1417027
Query 79899 GGGCGTCTCGCCGA 79912
||| ||||| |||
Sbjct 1417028 GGGTCTCTCGGCGA 1417041
Score = 345 bits (382), Expect = 5e-90
Identities = 1141/1751 (65%), Gaps = 51/1751 (3%)
Strand=Plus/Minus
Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156
|||| || ||| || | ||||||| || || ||||| ||| || ||| || | |
Sbjct 1417036 GAGAGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGGGACAACGTTGAG 1416977
Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGAC 19215
|| ||| |||||| ||| || ||||| | || ||||| ||||| ||||| | || ||
Sbjct 1416976 CGCGTCATCGAGACCTACAACTTGATGT-CAAGCAAGTTTTTCACCCACGCCTCTCCCAC 1416918
Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275
|| |||||||||||||| | | | || |||| || ||||| || | |||||
Sbjct 1416917 ACTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCTTGTCGACATGAA 1416858
Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335
||| ||| ||| || ||||||||||| || |||||| ||| || ||||| |||
Sbjct 1416857 GGAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCATGATCTCAAAGAT 1416798
Query 19336 GTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395
| | || || || || || || | || || | | ||| | ||| ||
Sbjct 1416797 GGCTGGCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACTGGCTCGTACATCGCCGG 1416738
Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455
|| || || || ||||| || |||| ||||| || || ||||||||||| || |
Sbjct 1416737 CACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCAACAACACCGCTCG 1416678
Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515
|||||| ||||||| ||| ||| ||| ||| | ||||||||||| |||||||| ||
Sbjct 1416677 CTACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTCGCCATCTATCTCGAGCCCTG 1416618
Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575
|||||| || || | || ||| | || || ||| |||||| || | |||||| | ||
Sbjct 1416617 GCACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCG 1416558
Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635
||||| |||||| ||| | |||||||| || || |||||| ||| ||| || ||
Sbjct 1416557 TGCCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGTGGAAAA 1416498
Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695
| | | || ||| || ||||| || |||| ||||| ||||| ||||| ||| ||
Sbjct 1416497 GAATGGCGAGTGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTGCTATGG 1416438
Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAGGTGG 19754
||| | ||| | | ||||| || |||| ||| | ||||| | | |||
Sbjct 1416437 CGAAGAGTTTGAGGCCTTGTATGAGAAGTACG-AGCGCGAGGGCAAGGGCCGCAAGACCC 1416379
Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814
| ||| | | ||||| | | | ||| | ||| |||||| || | ||||
Sbjct 1416378 TAAAGGCTCAAAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAGACTGGTAACCCGT 1416319
Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874
|||| || ||||| ||| ||| |||| || ||||||||| |||| | |||
Sbjct 1416318 TCATGCTTTATAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCC 1416259
Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934
||||| ||||| ||||| ||||| ||| | | ||| |||||| || || |
Sbjct 1416258 GCAATTCCAATCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGACGAGGTCGCTGTTT 1416199
Query 19935 GTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACT 19988
| || |||| || || |||||| | || || ||| | | | |||||
Sbjct 1416198 GCAACTTGGCCTCGCTCGCCCTGCCTGCATTTGTCGACTACAACGAGAGTGCATACGACT 1416139
Query 19989 TTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATC 20048
| || | | ||| |||| ||| || || || ||||| | |||| |||
Sbjct 1416138 TCCAGAAGCTCCATGAGACCACCCAGGTTGTTGTACGCAACCTGAACAGGATCATTGATG 1416079
Query 20049 GGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGA 20108
||| ||||| || ||| || || || ||||| ||||| || ||||
Sbjct 1416078 TCAACCACTACCCTGTTCCGGAGGCTCGTAACAGCAACATGCGTCACCGCCCTATCGGCC 1416019
Query 20109 TCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT--CATTCGACGATCC 20166
| || ||||| || || || || | |||| || |||| || ||| | ||||| ||
Sbjct 1416018 TTGGTGTCCAAGGTCTTGCTGATGCTTTCTTG--GCTCTGCGTCTGCCCTTCGAGTCCCC 1415961
Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTG 20224
|||| ||||| || || || ||||||||| || | |||||||| || || ||
Sbjct 1415960 TGAGGCTCGCGATCTTAATAAAAAGATCTTCGAGACCATCTACCACGCTGCTCTGACCAT 1415901
Query 20225 GAATC-GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGC 20283
| || |||| | || ||||| ||||| || | |||||| | | | |||| |||||
Sbjct 1415900 G--TCGGTGC-AGCTGGCCAAGGAGGAGGGTACCTACGAGTCTTACGAGGGTTCGCCTAT 1415844
Query 20284 GTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA------CTGA-GAATGAGTTTT 20336
||| |||| |||||| ||||||||||| || | | || ||| | |
Sbjct 1415843 CTCCAAGGGCGAGCTCCAGTATGACATGTGGGGAGTGAAGCCGTCCGACTTATGGGACTG 1415784
Query 20337 GGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGC 20396
||| | | || |||| |||||| | ||||| | |||||| |||| || || |
Sbjct 1415783 GGA-CTCGCTGAAGGAGCAGATCACGCAGCACGGTGTACGCAACAGTCTGCTTGTTGCCC 1415725
Query 20397 CCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACA 20456
||||||| || ||| ||| | |||||| |||| |||| ||| ||||| |||||||
Sbjct 1415724 CCATGCCTACTGCCAGCACCTCGCAGATCCTGGGCTACAATGAGTGCTTCGAACCGTACA 1415665
Query 20457 CGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACC 20516
| ||||||||||| ||| ||| ||||||||| |||||| || ||| ||| | ||
Sbjct 1415664 CCTCCAACATCTACCAGCGCCGTGTACTGGCCGGCGAGTTC--CA-GGTCGTCAA-CCCC 1415609
Query 20517 TGG----TCCGCGACTTGCAGAAGATCGATATGTGGTC----GCCCAAAATTAAGAATGA 20568
||| || || || |||| | ||||||| ||| || |||||
Sbjct 1415608 TGGCTTCTCAAGGATCTGGTCGAGATGGGCCTGTGGTCTGATGCC----ATGAAGAACCG 1415553
Query 20569 AAT--TGTCCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAAG 20623
|| | ||||| ||| || ||| ||| | | ||||| | | |||
Sbjct 1415552 TATCATCGCCGAG--AACGGTTCTGTTCAGAACATCCCGAACATCCCGGCCGAGGTGAAG 1415495
Query 20624 GACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGAT 20683
| | |||| |||||| ||||||||| | ||| || | | | | ||||| || ||
Sbjct 1415494 GCTCTGTACAAGACCGTCTGGGAAATCTCTCAGCGGACCGTTGTTCAGATGGCCGCAGAC 1415435
Query 20684 CGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTG 20743
|| || |||| |||||||||||| ||||| ||||| | |||| || | |||| | ||
Sbjct 1415434 CGTGGTGCCTTCATCGACCAGTCGCAGTCCCTCAACATTCACATGAAGGACCCGACCATG 1415375
Query 20744 GCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTAC 20803
| ||| | | | |||||| | ||| ||| | || || ||||| |||||||||
Sbjct 1415374 GGCAAGATCACCAGCATGCACTTCGCCGGTTGGAAGCTCGGCCTGAAGACAGGCATGTAC 1415315
Query 20804 TATCTGCGGAC 20814
|| ||||| ||
Sbjct 1415314 TACCTGCGAAC 1415304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548520974039520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |