Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq516 473 1e-128 >seq516 Length=1641395 Score = 473 bits (524), Expect = 1e-128 Identities = 1168/1754 (67%), Gaps = 47/1754 (3%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 ||||||| ||||||||||| ||||| || || |||||| ||| | |||||| || Sbjct 1415304 GTTCGCAGGTAGTACATGCCTGTCTTCAGGCCGAGCTTCCAACCGGCGAAGTGCATGCTG 1415363 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | | |||| ||| |||||| || |||| |||||||| ||||| |||||||||||| Sbjct 1415364 GTGATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGGGACTGCGACTGGTCGATG 1415423 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||| ||||| || ||||| | | || | | || | || ||||||| |||| Sbjct 1415424 AAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGAGAGATTTCCCAGACGGTC 1415483 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCGGCTCGC 78429 ||| | ||||||| ||| || |||||| | | | | | | | | | | || | Sbjct 1415484 TTGTACAGAGCCTTCACCTCGGCCGGGATGTTCGG-GATGTTCTGAACAGAACCGTTCTC 1415542 Query 78430 A-CAATTTCA---TTCTTAATTTGAGGGTTCCAGCGATTGATCTTCTGAAGATCCCGGA- 78484 | || | ||||| || | ||| | |||| |||||| || Sbjct 1415543 GGCGATGATACGGTTCTTCATGGCATCAGACCACAGGCCCATCTCGACCAGATCCTTGAG 1415602 Query 78485 ---CCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGT 78541 ||||| |||| | | ||||||||||||||| |||||| ||||||||| Sbjct 1415603 AAGCCAGG----GGTTGACGACCTGGAACTCGCCGGCCAGTACACGGCGCTGGTAGATGT 1415658 Query 78542 TGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCG 78601 ||| |||||||| ||||| ||| |||| |||| |||||| | ||| ||| || | Sbjct 1415659 TGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCTGGCAGTAG 1415718 Query 78602 GCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGACCTTTAGG- 78660 ||||||| || || || ||| || || | ||| ||| | |||||| |||| || Sbjct 1415719 GCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTCCTTCAGCG 1415778 Query 78661 -----CCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCT 78715 | |||||| || || || | | ||||||||||| || || |||| Sbjct 1415779 AGTCCCAGTCCCATAAGTCGGACGGCTTCACTCCCCACATGTCATACTGGAGCTCGCCCT 1415838 Query 78716 CGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT- 78774 ||| ||||| |||| | | | |||||| | |||||||||||||| || | ||| Sbjct 1415839 TGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGGCCAGCT-GCACC 1415897 Query 78775 GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCC 78834 ||| | ||| || |||||||| | | ||||||||| || || || ||||| ||| Sbjct 1415898 GACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTAAGATCGCGAGCC 1415957 Query 78835 TTGGTCTCGTCGAACGAAAG--GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGC 78892 | | ||||| | || || |||| || ||| |||| || || || ||||| | Sbjct 1415958 TCAGGGGACTCGAAGGGCAGACGCAGAGC--CAAGAAAGCATCAGCAAGACCTTGGACAC 1416015 Query 78893 CGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952 | | |||| || ||||| ||||||||||| || || ||| || ||||| || Sbjct 1416016 CAAGGCCGATAGGGCGGTGACGCATGTTGCTGTTACGAGCCTCCGGAACAGGGTAGTGGT 1416075 Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGG 79012 | ||| |||| | ||||||||| || || ||| | || ||| | | || Sbjct 1416076 TGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTCATGGAGCTTCT 1416135 Query 79013 CGAAATCAAAATGATTTCCTTTGATG------AAAGTCGGTAGGCACAGCGATGCCAGGT 79066 ||| || | | | | ||| | || | || ||| ||||| |||| || Sbjct 1416136 GGAAGTCGTATGCACTCTCGTTGTAGTCGACAAATGCAGGCAGGGCGAGCGAGGCCAAGT 1416195 Query 79067 TGCACACGGCCGTCTCGTCCGG-GCT-AGAAACCTCGATGATTTCTGTGCACAAATTAGA 79124 |||| || || |||||| || || || | ||| ||||| || ||||||| ||| || Sbjct 1416196 TGCAAACAGCGACCTCGTCAGGCGCGCAGTA--CTCAATGATCTCAGTGCACAGATTGGA 1416253 Query 79125 CGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT---CCTTGTA 79181 |||||| |||| |||||||||||||||||| ||| ||||| |||| || Sbjct 1416254 ATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT---GGCGTGATCCTTATA 1416310 Query 79182 GCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCG 79241 |||| |||| | || ||||| ||| || ||||| | | | ||||| | | Sbjct 1416311 AAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTG 1416370 Query 79242 GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGA-CGTACGTCCGGTACAACTCGTTGA 79300 ||| | ||| | | |||| ||| ||||| || ||||| | | | Sbjct 1416371 AGCCTTTAGGGTCTTGCGGCCCTTGCCCTC-GCGCTCGTACTTCTCATACAAGGCCTCAA 1416429 Query 79301 AAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360 | | || |||||| |||| ||||| |||||||||| || ||||| || ||| | Sbjct 1416430 ACTCTTCGCCATAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACT 1416489 Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420 | | | ||| || ||| ||| ||||||||| || || ||||| ||||| |||||| | Sbjct 1416490 CGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAAGGAAGAGAT 1416549 Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480 ||||| ||| | |||||| | ||| |||||| || || || | || || | | | Sbjct 1416550 CGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACTCGAAAACAT 1416609 Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 |||||||||| ||||| |||||||||||||| | || ||||||| ||| ||||||| Sbjct 1416610 CGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGCCACCCTGGT 1416669 Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600 |||||| || || ||||||||||||||||| |||||||| | || |||| || | || Sbjct 1416670 CGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGTTGGAGGTGC 1416729 Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGC 79660 | || || ||| ||| | || | || |||||| | || || || |||| Sbjct 1416730 CATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAATGCGGTGGACGTTCATGCCAATGC 1416789 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | || | | ||| ||||| || ||| |||||| || ||||||||||| ||||| | Sbjct 1416790 CGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAGATGCCTTCGATGG 1416849 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780 |||| |||||||| |||| |||||||| |||| || | | | |||||||||| Sbjct 1416850 AGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAGTTGAGCCTGGGGGGTACCGGCGT 1416909 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTT--TTGGCTCATCAGATCGTACGTCTC 79838 |||| || || || | ||||| ||||| ||||| ||| ||||| | ||| ||||| Sbjct 1416910 TGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTG--ACATCAAGTTGTAGGTCTC 1416967 Query 79839 CTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG 79898 |||||||| | || ||| || ||| ||||| || || ||||||| | || ||| Sbjct 1416968 GATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAACACGCATGATCATGTGCTG 1417027 Query 79899 GGGCGTCTCGCCGA 79912 ||| ||||| ||| Sbjct 1417028 GGGTCTCTCGGCGA 1417041 Score = 345 bits (382), Expect = 5e-90 Identities = 1141/1751 (65%), Gaps = 51/1751 (3%) Strand=Plus/Minus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| || ||| || | ||||||| || || ||||| ||| || ||| || | | Sbjct 1417036 GAGAGACCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGGGACAACGTTGAG 1416977 Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAG-AAGTTCTTCACGCACGCGACGCCGAC 19215 || ||| |||||| ||| || ||||| | || ||||| ||||| ||||| | || || Sbjct 1416976 CGCGTCATCGAGACCTACAACTTGATGT-CAAGCAAGTTTTTCACCCACGCCTCTCCCAC 1416918 Query 19216 CCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAA 19275 || |||||||||||||| | | | || |||| || ||||| || | ||||| Sbjct 1416917 ACTGTTCAACGCCGGTACCCCCCAGGCTCAACTGTCTTCTTGCTTCCTTGTCGACATGAA 1416858 Query 19276 GGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTG 19335 ||| ||| ||| || ||||||||||| || |||||| ||| || ||||| ||| Sbjct 1416857 GGAGGACTCCATCGAAGGCATCTACGACACTCTCAAGACGTGTGCCATGATCTCAAAGAT 1416798 Query 19336 GTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGG 19395 | | || || || || || || | || || | | ||| | ||| || Sbjct 1416797 GGCTGGCGGCATTGGCATGAACGTCCACCGCATTCGCGCTACTGGCTCGTACATCGCCGG 1416738 Query 19396 GACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAG 19455 || || || || ||||| || |||| ||||| || || ||||||||||| || | Sbjct 1416737 CACCAATGGCACCTCCAACGGTGTCATCCCCATGCTTCGAGTTTTCAACAACACCGCTCG 1416678 Query 19456 GTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATG 19515 |||||| ||||||| ||| ||| ||| ||| | ||||||||||| |||||||| || Sbjct 1416677 CTACGTCGACCAGGGTGGCAACAAGCGCCCCGGCGCCTTCGCCATCTATCTCGAGCCCTG 1416618 Query 19516 GCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCG 19575 |||||| || || | || ||| | || || ||| |||||| || | |||||| | || Sbjct 1416617 GCACGCCGATGTTTTCGAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCG 1416558 Query 19576 CTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAA 19635 ||||| |||||| ||| | |||||||| || || |||||| ||| ||| || || Sbjct 1416557 TGCCCGCGATCTCTTCCTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGTGGAAAA 1416498 Query 19636 GGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGG 19695 | | | || ||| || ||||| || |||| ||||| ||||| ||||| ||| || Sbjct 1416497 GAATGGCGAGTGGACGCTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTGCTATGG 1416438 Query 19696 CGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC-CCAGGGCCGGTTCAAGAAGGTGG 19754 ||| | ||| | | ||||| || |||| ||| | ||||| | | ||| Sbjct 1416437 CGAAGAGTTTGAGGCCTTGTATGAGAAGTACG-AGCGCGAGGGCAAGGGCCGCAAGACCC 1416379 Query 19755 TCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGT 19814 | ||| | | ||||| | | | ||| | ||| |||||| || | |||| Sbjct 1416378 TAAAGGCTCAAAAGCTCTGGTATGCCATTCTCGAGGCACAGACCGAGACTGGTAACCCGT 1416319 Query 19815 ACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCA 19874 |||| || ||||| ||| ||| |||| || ||||||||| |||| | ||| Sbjct 1416318 TCATGCTTTATAAGGATCACGCCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCC 1416259 Query 19875 AGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGT 19934 ||||| ||||| ||||| ||||| ||| | | ||| |||||| || || | Sbjct 1416258 GCAATTCCAATCTGTGCACTGAGATCATTGAGTACTGCGCGCCTGACGAGGTCGCTGTTT 1416199 Query 19935 GTAATCTGGCGTCCCTGTGCCTGCCGACTTTCGT------CAAGGCCTCCTCCTTCGACT 19988 | || |||| || || |||||| | || || ||| | | | ||||| Sbjct 1416198 GCAACTTGGCCTCGCTCGCCCTGCCTGCATTTGTCGACTACAACGAGAGTGCATACGACT 1416139 Query 19989 TTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATC 20048 | || | | ||| |||| ||| || || || ||||| | |||| ||| Sbjct 1416138 TCCAGAAGCTCCATGAGACCACCCAGGTTGTTGTACGCAACCTGAACAGGATCATTGATG 1416079 Query 20049 GGAACTTTTACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGA 20108 ||| ||||| || ||| || || || ||||| ||||| || |||| Sbjct 1416078 TCAACCACTACCCTGTTCCGGAGGCTCGTAACAGCAACATGCGTCACCGCCCTATCGGCC 1416019 Query 20109 TCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCT--CATTCGACGATCC 20166 | || ||||| || || || || | |||| || |||| || ||| | ||||| || Sbjct 1416018 TTGGTGTCCAAGGTCTTGCTGATGCTTTCTTG--GCTCTGCGTCTGCCCTTCGAGTCCCC 1415961 Query 20167 CAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT--CCTG 20224 |||| ||||| || || || ||||||||| || | |||||||| || || || Sbjct 1415960 TGAGGCTCGCGATCTTAATAAAAAGATCTTCGAGACCATCTACCACGCTGCTCTGACCAT 1415901 Query 20225 GAATC-GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGC 20283 | || |||| | || ||||| ||||| || | |||||| | | | |||| ||||| Sbjct 1415900 G--TCGGTGC-AGCTGGCCAAGGAGGAGGGTACCTACGAGTCTTACGAGGGTTCGCCTAT 1415844 Query 20284 GTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCA------CTGA-GAATGAGTTTT 20336 ||| |||| |||||| ||||||||||| || | | || ||| | | Sbjct 1415843 CTCCAAGGGCGAGCTCCAGTATGACATGTGGGGAGTGAAGCCGTCCGACTTATGGGACTG 1415784 Query 20337 GGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGC 20396 ||| | | || |||| |||||| | ||||| | |||||| |||| || || | Sbjct 1415783 GGA-CTCGCTGAAGGAGCAGATCACGCAGCACGGTGTACGCAACAGTCTGCTTGTTGCCC 1415725 Query 20397 CCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACA 20456 ||||||| || ||| ||| | |||||| |||| |||| ||| ||||| ||||||| Sbjct 1415724 CCATGCCTACTGCCAGCACCTCGCAGATCCTGGGCTACAATGAGTGCTTCGAACCGTACA 1415665 Query 20457 CGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACC 20516 | ||||||||||| ||| ||| ||||||||| |||||| || ||| ||| | || Sbjct 1415664 CCTCCAACATCTACCAGCGCCGTGTACTGGCCGGCGAGTTC--CA-GGTCGTCAA-CCCC 1415609 Query 20517 TGG----TCCGCGACTTGCAGAAGATCGATATGTGGTC----GCCCAAAATTAAGAATGA 20568 ||| || || || |||| | ||||||| ||| || ||||| Sbjct 1415608 TGGCTTCTCAAGGATCTGGTCGAGATGGGCCTGTGGTCTGATGCC----ATGAAGAACCG 1415553 Query 20569 AAT--TGTCCGAGCCGGCGGGAGCGTCCAG-GCAT--TGGATATCCCCCAGAACCTCAAG 20623 || | ||||| ||| || ||| ||| | | ||||| | | ||| Sbjct 1415552 TATCATCGCCGAG--AACGGTTCTGTTCAGAACATCCCGAACATCCCGGCCGAGGTGAAG 1415495 Query 20624 GACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGAT 20683 | | |||| |||||| ||||||||| | ||| || | | | | ||||| || || Sbjct 1415494 GCTCTGTACAAGACCGTCTGGGAAATCTCTCAGCGGACCGTTGTTCAGATGGCCGCAGAC 1415435 Query 20684 CGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTG 20743 || || |||| |||||||||||| ||||| ||||| | |||| || | |||| | || Sbjct 1415434 CGTGGTGCCTTCATCGACCAGTCGCAGTCCCTCAACATTCACATGAAGGACCCGACCATG 1415375 Query 20744 GCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTAC 20803 | ||| | | | |||||| | ||| ||| | || || ||||| ||||||||| Sbjct 1415374 GGCAAGATCACCAGCATGCACTTCGCCGGTTGGAAGCTCGGCCTGAAGACAGGCATGTAC 1415315 Query 20804 TATCTGCGGAC 20814 || ||||| || Sbjct 1415314 TACCTGCGAAC 1415304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548520974039520