Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq516 262 4e-65 seq537 132 5e-26 >seq516 Length=1641395 Score = 262 bits (290), Expect = 4e-65 Identities = 518/757 (68%), Gaps = 12/757 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | |||||| || ||| || ||| ||| ||||| ||| Sbjct 1417017 TCATGCGTGTTGCTGTCGGTATCTGGGGGGACAACGTTGAGCGCGTCATCGAGACCTACA 1416958 Query 53253 ACTTAATGAGCCAA--AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 |||| ||| ||| |||| || || |||||| | || || ||||||||||| ||||| Sbjct 1416957 ACTTGATGT--CAAGCAAGTTTTTCACCCACGCCTCTCCCACACTGTTCAACGCCGGTAC 1416900 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 || |||| |||| |||||||| || | |||||||| ||||| ||||| || Sbjct 1416899 CCCCCAGGCTCAACTGTCTTCTTGCTTCCTTGTCGACATGAAGGAGGACTCCATCGAAGG 1416840 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| || |||||| ||||||| ||||| ||| | | || || || || || Sbjct 1416839 CATCTACGACACTCTCAAGACGTGTGCCATGATCTCAAAGATGGCTGGCGGCATTGGCAT 1416780 Query 53431 CCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCC 53488 || || | || | || || | ||| | ||| || || || ||| | || Sbjct 1416779 GAACG--TCCACCGCATTCGCGCTACTGGCTCGTACATCGCCGGCACCAATGGCACCTCC 1416722 Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 | || || | || ||||| || || ||||||||||| || || |||||| |||||||| Sbjct 1416721 AACGGTGTCATCCCCATGCTTCGAGTTTTCAACAACACCGCTCGCTACGTCGACCAGGGT 1416662 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 || |||||| || | ||||||||||| |||||||| ||||||||||| || | Sbjct 1416661 GGCAACAAGCGCCCCGGCGCCTTCGCCATCTATCTCGAGCCCTGGCACGCCGATGTTTTC 1416602 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668 ||||| | || || || ||| || || | || ||| | || ||| || || || Sbjct 1416601 GAGTTCTTGGATCTCCGCAAGAACCACGGCAAAGAGGAGGTTCGTGCCCGCGATCTCTTC 1416542 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || |||||||| || ||||||||| | | |||||| ||| | | |||||| Sbjct 1416541 CTTGCCCTCTGGATTCCCGATCTCTTCATGAAGAGGGTGGAAAAGAATGGCGAGTGGACG 1416482 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCC-TCCAGGGTGTCTACGGTGAGGAGTTTAACGA 53787 || ||||| || |||||||||||||||| | | | || ||| || || |||||| | | Sbjct 1416481 CTCATGTGTCCCAACGAGTGCCCCGGCCTTGCCGACTG-CTATGGCGAAGAGTTTGAGGC 1416423 Query 53788 GATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGG 53846 ||||| || ||||| || | ||||| | |||| | ||||| | || Sbjct 1416422 CTTGTATGAGAAGTACG-AGCGCGAGGGCAAGGGCCGCAAGACCCTAAAGGCTCAAAAGC 1416364 Query 53847 TATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGG 53906 | ||| |||| || ||| || ||| ||||| || | |||| |||| || |||| Sbjct 1416363 TCTGGTATGCCATTCTCGAGGCACAGACCGAGACTGGTAACCCGTTCATGCTTTATAAGG 1416304 Query 53907 ATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || | |||| |||||||||||||||||| |||| Sbjct 1416303 ATCACGCCAACCGCAAGAGCAACCAGAAGAACCTCGG 1416267 >seq537 Length=1778172 Score = 132 bits (146), Expect = 5e-26 Identities = 204/291 (70%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 117310 AATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACT 117369 ||||||||||| ||| ||||| ||| |||||| |||||||| | |||||| | ||| Sbjct 1194412 AATGTAACGAGGGCTGGCAGCGTCCGAGCCACCGGCAAGACGAGAACCGAAGTTTCCGGA 1194471 Query 117370 CGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGT 117429 || |||||| ||| | |||||| | ||| |||||||| || || | | ||||| Sbjct 1194472 GGGTTCCAAGCAGTTGATGTTGTTTGAGCCGACAAAGTTCTGTGCGAGACCAATGATCGT 1194531 Query 117430 ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAG 117489 || || | ||||| || || |||| |||||||| | || || || |||| Sbjct 1194532 CTGCTGAAGCGAAACTTCACCGTGATGGTACGAGGTCTGCTCAGAAACATAACCAGCCAA 1194591 Query 117490 CTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 || | ||||| |||| ||| |||| |||||| ||||| || || |||||||| Sbjct 1194592 CTCAATAACCTTTTGGTCTTTGATCAAGTTCCTCTTGAAACAGGCGTAGATGACCTTGCG 1194651 Query 117550 CTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||| ||||||||||| || ||| ||| || || ||| || |||| Sbjct 1194652 CTGACCAGGCTTCAGACCGTCGATAACGGAAGGAATGGATCGCATGTTGTC 1194702 Score = 129 bits (142), Expect = 6e-25 Identities = 205/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 152035 ATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAG 152094 ||||| || | |||||| || ||| |||||| || || || | || || | ||| ||| Sbjct 1194413 ATGTAACGAGGGCTGGCAGCGTCCGAGCCACCGGCAAGACGAGAACCGAAGTTTCCGGAG 1194472 Query 152095 GGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTG 152154 || || | | ||||| |||||| | ||| || || ||||| || | | | ||||| Sbjct 1194473 GGTTCCAAGCAGTTGATGTTGTTTGAGCCGACAAAGTTCTGTGCGAGACCAATGATCGT- 1194531 Query 152155 CCCTGCAGACTCG---CTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCC 152211 |||| || || |||||||||| || |||| |||||||| | | || || ||| Sbjct 1194532 --CTGCTGAAGCGAAACTTCACCGTGATGGTACGAGGTCTGCTCAGAAACATAACCAGCC 1194589 Query 152212 AACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTG 152271 |||| ||||| ||| | ||| |||| |||||| ||||||||| || |||||| Sbjct 1194590 AACTCAATAACCTTTTGGTCTTTGATCAAGTTCCTCTTGAAACAGGCGTAGATGACCTTG 1194649 Query 152272 CGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| || |||| |||||| | ||| |||||| || ||| || |||| Sbjct 1194650 CGCTGACCAGGCTTCAGACCGTCGATAACGGAAGGAATGGATCGCATGTTGTC 1194702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212183168400