Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq516 307 1e-78
seq380 172 6e-38
seq547 163 3e-35
seq487 123 3e-23
seq537 109 6e-19
>seq516
Length=1641395
Score = 307 bits (340), Expect = 1e-78
Identities = 1144/1769 (65%), Gaps = 73/1769 (4%)
Strand=Plus/Plus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || ||||| ||||||||||| ||||| ||||| |||||| ||| | ||||
Sbjct 1415298 GCCTGAGTTCGCAGGTAGTACATGCCTGTCTTCAGGCCGAGCTTCCAACCGGCGAAGTGC 1415357
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
|| ||| ||| | | || |||| || |||| ||||| || ||||| |||||
Sbjct 1415358 ATGCTGGTGATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGGGACTGCGACTGG 1415417
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211
|||||| || ||||| ||||| ||||| | || || | | || | ||||||||
Sbjct 1415418 TCGATGAAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGAGAGATTTCCCAG 1415477
Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAG-ATTTTGCACACTGCC 80267
|| || |||| |||| | ||| | || |||| | | || || || |
Sbjct 1415478 ACGGTCTTGTACAGAGCCTTC---ACCTCGGCCGGGATGTTCGGGATGTTCTGAACAGA- 1415533
Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||||| || | || | || |||| || | ||| | || | || | |||
Sbjct 1415534 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAGGCCCATCTCGACCAG 1415593
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
||| || | ||| | | ||| | | || |||| || || || || ||| |
Sbjct 1415594 ATCCTTGAGAAGCCAGGGGTTGACGACCTGGA---ACTCGCCGGCCAGTACACGGCGCTG 1415650
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| || || || ||| |||| || |||||||| | |||||
Sbjct 1415651 GTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCT 1415710
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| ||| | || | ||| || || | ||||||| | |||| | |||
Sbjct 1415711 GGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTC 1415770
Query 80502 GCGCA---AATCTGA---CCAAAAATCA-ACCCCAACGCTGTGACCCCACATGTCGTGCT 80554
|| | || | ||| || || || | | || ||||||||||| | ||
Sbjct 1415771 CTTCAGCGAGTCCCAGTCCCATAAGTCGGACGGCTTCACT----CCCCACATGTCATACT 1415826
Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614
| | ||||| || || || ||| || | | |||||| | |||||| |||||
Sbjct 1415827 GGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGG 1415886
Query 80615 CCAGCT-CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673
|||||| ||| |||| | || || ||||| || ||| ||| |||| || ||
Sbjct 1415887 CCAGCTGCAC-CGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTA 1415945
Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733
| | |||| |||| ||| ||||| | || | || || ||| | ||||| ||
Sbjct 1415946 AGATCGCGAGCCTCAGGGGACTCGAAGGGCAGACGCAGAGCCAAGAAAGCATCAGCAAGA 1416005
Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792
|| || || || | | |||| |||||||| ||| |||| | | || ||||||||||
Sbjct 1416006 CCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTT-GCTGTTACGAGCCTCCGGAAC 1416064
Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852
||||| ||| ||| |||| | ||||||||||||| ||||||| | || ||
Sbjct 1416065 AGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTC 1416124
Query 80853 ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAG 80906
||| || ||||| |||||| || || | || |||||||| || ||| ||
Sbjct 1416125 ATGGAGCTTCTGGAAGTCGTATGCACTCTCGTTGTAGTCGACAAATGCAGGCAGGGCGAG 1416184
Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966
|| |||| ||||| || || ||||| |||| | |||| | ||| || |||||
Sbjct 1416185 CGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCA 1416244
Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT- 81025
|| ||| ||| || ||||| ||||| |||||||| |||| |||| ||||
Sbjct 1416245 CAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTG---GCGTG 1416301
Query 81026 --CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083
|||| || |||| ||||| |||| |||||| ||||| || ||| ||||| | |||
Sbjct 1416302 ATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCA 1416361
Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143
| || | ||||| | ||||||| ||||| ||| | | ||||| | ||
Sbjct 1416362 GAGCTTTTGAGCCTTTAGGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAA 1416421
Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202
| || |||| | || | | ||| | | ||| | ||||||||||| || ||||| |
Sbjct 1416422 GGCCTCAAACTCTTCGCCATAGCAGT-CGGCAAGGCCGGGGCACTCGTTGGGACACATGA 1416480
Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262
| ||| ||| | || || || ||||||||| || || |||||||||||
Sbjct 1416481 GCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAA 1416540
Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322
||| || |||||| || ||||||| | || ||||| ||| | || | || |
Sbjct 1416541 GGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACT 1416600
Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379
| | | || || ||||| ||||| ||||| | ||||| | || ||| ||
Sbjct 1416601 CGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGC 1416660
Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439
||||||||| |||||| || || || ||| || || || | ||| ||||||| ||| |
Sbjct 1416661 CACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGT 1416720
Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGA-- 81497
|| || || || || |||| ||| || | ||||| | ||| | | ||
Sbjct 1416721 TGGAGGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAA---TGC-GGTGGACG 1416776
Query 81498 --AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAA 81555
| || ||||| || | | |||||| ||| |||||| || | || || ||
Sbjct 1416777 TTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAG 1416836
Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCT 81607
|| || |||||| || | |||||||| ||||||||| |||| |||| ||
Sbjct 1416837 ATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAG-TTGA-GCCT 1416894
Query 81608 GAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667
| ||| | ||||| ||||||||||| || | ||||| ||||| | | |||
Sbjct 1416895 GGGGG------GTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTG 1416948
Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727
|||||| || ||||| || ||||||| || | ||| || ||||||| ||| |
Sbjct 1416949 ACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAA 1417008
Query 81728 CACGCATAAACATGTACTGGGGCGTCTCG 81756
||||||| | ||||| |||||| |||||
Sbjct 1417009 CACGCATGATCATGTGCTGGGGTCTCTCG 1417037
>seq380
Length=739652
Score = 172 bits (190), Expect = 6e-38
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || ||||||||||| ||||| |||||||| |||||| ||||| ||| |
Sbjct 523177 GTCAAGACACTCACCGGCAAGACCATTACCCTTGAGGTAGAGTCATCTGATACCATCGAC 523236
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
|| | ||| | || || |||||||||||||| ||||| || ||||||||||| || |||
Sbjct 523237 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGGCTGATT 523296
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|| ||||| |||||||||||||||| |||||| | | || || || | || |||||
Sbjct 523297 TTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAG 523356
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || | || |||||| | ||||| ||
Sbjct 523357 TCTACGCTCCACTTGGTGTTGCGTTTGCGCGGAGG 523391
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || |||||||| || || ||||||||||||||
Sbjct 523393 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCA 523452
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | ||| | || |||||||| |||||||| ||||| || ||||||
Sbjct 523453 GATACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAG 523512
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || |||||| | ||||||| |||||| || | ||||| ||
Sbjct 523513 CAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAAC 523572
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| |||||||| || |||||||| ||| | || || || || ||
Sbjct 523573 ATCCAGAAGGAATCAACCCTTCATCTCGTCCTCCGCCTCCGTGGAGG 523619
Score = 163 bits (180), Expect = 3e-35
Identities = 158/203 (78%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || ||||| ||||| ||||| || | ||| | ||| | ||| |
Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| || |||||||||||||| |||||||| ||||||||||| || ||||| ||||| |||
Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| |||||||||| ||||| || | ||||| || | || ||||| |||||||||||
Sbjct 523029 CAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 523088
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
| || | ||||| ||||||||
Sbjct 523089 TTGGTTCTCCGTCTCCGCGGTGG 523111
Score = 154 bits (170), Expect = 2e-32
Identities = 175/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || |||||||| ||||| | ||||| |||||
Sbjct 523621 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCA 523680
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || ||||| | || ||||| ||||||||||| || || || ||||||
Sbjct 523681 GACACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAG 523740
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|| ||||| || |||||||||||||| | ||||||| || || || ||| ||||| ||
Sbjct 523741 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGC-GACTACAA 523799
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636
| || |||||||| || || ||||| || | ||| | || || || |||
Sbjct 523800 CATTCAGAAGGAATCAACCCTCCATCTTGTTCTCCGTTTACGTGGCGGTCAA 523851
>seq547
Length=620828
Score = 163 bits (180), Expect = 3e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| || ||||| ||||| || |||||||| || |||||||| |||||
Sbjct 191590 ATCATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 191531
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | ||| | ||| | || || |||||||||||||| || || || |||
Sbjct 191530 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 191471
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
|||||||| | || || || || ||||| |||||||| | || ||||| | |||||
Sbjct 191470 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 191411
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| |||| ||||| ||||| || || || ||| ||||||| || |||||
Sbjct 191410 AACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGTCTGCGTGGTGG 191361
>seq487
Length=725459
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || |||||||| ||||| ||| | ||
Sbjct 202619 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGATC 202678
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| |||||||| ||||||||||| |
Sbjct 202679 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTG 202738
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || || || ||||| |||||||| | || ||||| | ||||| || |||| |||
Sbjct 202739 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAG 202798
Query 27595 G 27595
|
Sbjct 202799 G 202799
>seq537
Length=1778172
Score = 109 bits (120), Expect = 6e-19
Identities = 195/285 (68%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018
|| ||| |||||||| ||| ||||| || |||||| ||||||||||| || ||
Sbjct 1194697 CATGCGATCCATTCCTTCCGTTATCGACGGTCTGAAGCCTGGTCAGCGCAAGGTCATCTA 1194638
Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078
|||||| |||||| |||| || | ||| ||||| || || | || || ||
Sbjct 1194637 CGCCTGTTTCAAGAGGAACTTGATCAAAGACCAAAAGGTTATTGAGTTGGCTGGTTATGT 1194578
Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138
| ||||| || | || || ||||| || | ||||| ||| || || | ||
Sbjct 1194577 TTCTGAGCAGACCTCGTACCATCACGGTGAAGTTTCGCTTCAGCAGACGATCATTGGTCT 1194518
Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198
|| |||||||||||||| |||| ||| | |||| | || || || ||| | || ||
Sbjct 1194517 CGCACAGAACTTTGTCGGCTCAAACAACATCAACTGCTTGGAACCCTCCGGAAACTTCGG 1194458
Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243
| || || ||||||||| ||| ||||| ||| | ||||||||
Sbjct 1194457 TTCTCGTCTTGCCGGTGGCTCGGACGCTGCCAGCCCTCGTTACAT 1194413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306422084960
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