Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq516 307 1e-78 seq380 172 6e-38 seq547 163 3e-35 seq487 123 3e-23 seq537 109 6e-19 >seq516 Length=1641395 Score = 307 bits (340), Expect = 1e-78 Identities = 1144/1769 (65%), Gaps = 73/1769 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || ||||| ||||||||||| ||||| ||||| |||||| ||| | |||| Sbjct 1415298 GCCTGAGTTCGCAGGTAGTACATGCCTGTCTTCAGGCCGAGCTTCCAACCGGCGAAGTGC 1415357 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | || |||| || |||| ||||| || ||||| ||||| Sbjct 1415358 ATGCTGGTGATCTTGCCCATGGTCGGGTCCTTCATGTGAATGTTGAGGGACTGCGACTGG 1415417 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCAT 80211 |||||| || ||||| ||||| ||||| | || || | | || | |||||||| Sbjct 1415418 TCGATGAAGGCACCACGGTCTGCGGCCATCTGAACAACGGTCCGCTGAGAGATTTCCCAG 1415477 Query 80212 ACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAG-ATTTTGCACACTGCC 80267 || || |||| |||| | ||| | || |||| | | || || || | Sbjct 1415478 ACGGTCTTGTACAGAGCCTTC---ACCTCGGCCGGGATGTTCGGGATGTTCTGAACAGA- 1415533 Query 80268 ACCGTCCTTTACAATTTGA---TTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||||| || | || | || |||| || | ||| | || | || | ||| Sbjct 1415534 ACCGTTCTCGGCGATGATACGGTTCTTCATGGCATCAGACCACAGGCCCATCTCGACCAG 1415593 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 ||| || | ||| | | ||| | | || |||| || || || || ||| | Sbjct 1415594 ATCCTTGAGAAGCCAGGGGTTGACGACCTGGA---ACTCGCCGGCCAGTACACGGCGCTG 1415650 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| || || || ||| |||| || |||||||| | ||||| Sbjct 1415651 GTAGATGTTGGAGGTGTACGGTTCGAAGCACTCATTGTAGCCCAGGATCTGCGAGGTGCT 1415710 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| ||| | || | ||| || || | ||||||| | |||| | ||| Sbjct 1415711 GGCAGTAGGCATGGGGGCAACAAGCAGACTGTTGCGTACACCGTGCTGCGTGATCTGCTC 1415770 Query 80502 GCGCA---AATCTGA---CCAAAAATCA-ACCCCAACGCTGTGACCCCACATGTCGTGCT 80554 || | || | ||| || || || | | || ||||||||||| | || Sbjct 1415771 CTTCAGCGAGTCCCAGTCCCATAAGTCGGACGGCTTCACT----CCCCACATGTCATACT 1415826 Query 80555 GCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGG 80614 | | ||||| || || || ||| || | | |||||| | |||||| ||||| Sbjct 1415827 GGAGCTCGCCCTTGGAGATAGGCGAACCCTCGTAAGACTCGTAGGTACCCTCCTCCTTGG 1415886 Query 80615 CCAGCT-CACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTC 80673 |||||| ||| |||| | || || ||||| || ||| ||| |||| || || Sbjct 1415887 CCAGCTGCAC-CGACATGGTCAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTTTTATTA 1415945 Query 80674 ACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGG 80733 | | |||| |||| ||| ||||| | || | || || ||| | ||||| || Sbjct 1415946 AGATCGCGAGCCTCAGGGGACTCGAAGGGCAGACGCAGAGCCAAGAAAGCATCAGCAAGA 1416005 Query 80734 CCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAAT 80792 || || || || | | |||| |||||||| ||| |||| | | || |||||||||| Sbjct 1416006 CCTTGGACACCAAGGCCGATAGGGCGGTGACGCATGTT-GCTGTTACGAGCCTCCGGAAC 1416064 Query 80793 TGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATC 80852 ||||| ||| ||| |||| | ||||||||||||| ||||||| | || || Sbjct 1416065 AGGGTAGTGGTTGACATCAATGATCCTGTTCAGGTTGCGTACAACAACCTGGGTGGTCTC 1416124 Query 80853 ATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAG 80906 ||| || ||||| |||||| || || | || |||||||| || ||| || Sbjct 1416125 ATGGAGCTTCTGGAAGTCGTATGCACTCTCGTTGTAGTCGACAAATGCAGGCAGGGCGAG 1416184 Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCA 80966 || |||| ||||| || || ||||| |||| | |||| | ||| || ||||| Sbjct 1416185 CGAGGCCAAGTTGCAAACAGCGACCTCGTCAGGCGCGCAGTACTCAATGATCTCAGTGCA 1416244 Query 80967 CAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGT- 81025 || ||| ||| || ||||| ||||| |||||||| |||| |||| |||| Sbjct 1416245 CAGATTGGAATTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTG---GCGTG 1416301 Query 81026 --CCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCA 81083 |||| || |||| ||||| |||| |||||| ||||| || ||| ||||| | ||| Sbjct 1416302 ATCCTTATAAAGCATGAACGGGTTACCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCA 1416361 Query 81084 AATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGC 81143 | || | ||||| | ||||||| ||||| ||| | | ||||| | || Sbjct 1416362 GAGCTTTTGAGCCTTTAGGGTCTTGCGGCCCTTGCCCTCGCGCTCGTACTTCTCATACAA 1416421 Query 81144 TTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCA 81202 | || |||| | || | | ||| | | ||| | ||||||||||| || ||||| | Sbjct 1416422 GGCCTCAAACTCTTCGCCATAGCAGT-CGGCAAGGCCGGGGCACTCGTTGGGACACATGA 1416480 Query 81203 GGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGG 81262 | ||| ||| | || || || ||||||||| || || ||||||||||| Sbjct 1416481 GCGTCCACTCGCCATTCTTTTCCACCCTCTTCATGAAGAGATCGGGAATCCAGAGGGCAA 1416540 Query 81263 TGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 ||| || |||||| || ||||||| | || ||||| ||| | || | || | Sbjct 1416541 GGAAGAGATCGCGGGCACGAACCTCCTCTTTGCCGTGGTTCTTGCGGAGATCCAAGAACT 1416600 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGC 81379 | | | || || ||||| ||||| ||||| | ||||| | || ||| || Sbjct 1416601 CGAAAACATCGGCGTGCCAGGGCTCGAGATAGATGGCGAAGGCGCCGGGGCGCTTGTTGC 1416660 Query 81380 CACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCAT 81439 ||||||||| |||||| || || || ||| || || || | ||| ||||||| ||| | Sbjct 1416661 CACCCTGGTCGACGTAGCGAGCGGTGTTGTTGAAAACTCGAAGCATGGGGATGACACCGT 1416720 Query 81440 CTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGA-- 81497 || || || || || |||| ||| || | ||||| | ||| | | || Sbjct 1416721 TGGAGGTGCCATTGGTGCCGGCGATGTACGAGCCAGTAGCGCGAA---TGC-GGTGGACG 1416776 Query 81498 --AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAA 81555 | || ||||| || | | |||||| ||| |||||| || | || || || Sbjct 1416777 TTCATGCCAATGCCGCCAGCCATCTTTGAGATCATGGCACACGTCTTGAGAGTGTCGTAG 1416836 Query 81556 ATTCCCTCGATGCTATCTTTTTTCATGTC-------AAGCAAGAA-ACAGCTTGACATCT 81607 || || |||||| || | |||||||| ||||||||| |||| |||| || Sbjct 1416837 ATGCCTTCGATGGAGTCCTCCTTCATGTCGACAAGGAAGCAAGAAGACAG-TTGA-GCCT 1416894 Query 81608 GAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTG 81667 | ||| | ||||| ||||||||||| || | ||||| ||||| | | ||| Sbjct 1416895 GGGGG------GTACCGGCGTTGAACAGTGTGGGAGAGGCGTGGGTGAAAAACTTGCTTG 1416948 Query 81668 ACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||||| || ||||| || ||||||| || | ||| || ||||||| ||| | Sbjct 1416949 ACATCAAGTTGTAGGTCTCGATGACGCGCTCAACGTTGTCCCCCCAGATACCGACAGCAA 1417008 Query 81728 CACGCATAAACATGTACTGGGGCGTCTCG 81756 ||||||| | ||||| |||||| ||||| Sbjct 1417009 CACGCATGATCATGTGCTGGGGTCTCTCG 1417037 >seq380 Length=739652 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || ||||||||||| ||||| |||||||| |||||| ||||| ||| | Sbjct 523177 GTCAAGACACTCACCGGCAAGACCATTACCCTTGAGGTAGAGTCATCTGATACCATCGAC 523236 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| ||||| || ||||||||||| || ||| Sbjct 523237 AACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGGCTGATT 523296 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| |||||||||||||||| |||||| | | || || || | || ||||| Sbjct 523297 TTCGCTGGCAAGCAACTCGAGGATGGTCGTACTTTGTCCGATTACAACATTCAGAAGGAG 523356 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | || |||||| | ||||| || Sbjct 523357 TCTACGCTCCACTTGGTGTTGCGTTTGCGCGGAGG 523391 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || |||||||||||||| Sbjct 523393 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCA 523452 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| | || |||||||| |||||||| ||||| || |||||| Sbjct 523453 GATACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAG 523512 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||| | ||||||| |||||| || | ||||| || Sbjct 523513 CAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAAC 523572 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || |||||||| ||| | || || || || || Sbjct 523573 ATCCAGAAGGAATCAACCCTTCATCTCGTCCTCCGCCTCCGTGGAGG 523619 Score = 163 bits (180), Expect = 3e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||| ||||| ||||| || | ||| | ||| | ||| | Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| |||||||| ||||||||||| || ||||| ||||| ||| Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || |||||||||| ||||| || | ||||| || | || ||||| ||||||||||| Sbjct 523029 CAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTCAC 523088 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 | || | ||||| |||||||| Sbjct 523089 TTGGTTCTCCGTCTCCGCGGTGG 523111 Score = 154 bits (170), Expect = 2e-32 Identities = 175/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| ||||| | ||||| ||||| Sbjct 523621 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCA 523680 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| | || ||||| ||||||||||| || || || |||||| Sbjct 523681 GACACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAG 523740 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || |||||||||||||| | ||||||| || || || ||| ||||| || Sbjct 523741 CAACGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGC-GACTACAA 523799 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || |||||||| || || ||||| || | ||| | || || || ||| Sbjct 523800 CATTCAGAAGGAATCAACCCTCCATCTTGTTCTCCGTTTACGTGGCGGTCAA 523851 >seq547 Length=620828 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 191590 ATCATGCAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCT 191531 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || || ||| Sbjct 191530 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 191471 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | || || || || ||||| |||||||| | || ||||| | ||||| Sbjct 191470 CAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTAC 191411 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || ||| ||||||| || ||||| Sbjct 191410 AACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTGCGTCTGCGTGGTGG 191361 >seq487 Length=725459 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || |||||||| ||||| ||| | || Sbjct 202619 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGATC 202678 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| |||||||| ||||||||||| | Sbjct 202679 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTTG 202738 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || || || ||||| |||||||| | || ||||| | ||||| || |||| ||| Sbjct 202739 ATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAG 202798 Query 27595 G 27595 | Sbjct 202799 G 202799 >seq537 Length=1778172 Score = 109 bits (120), Expect = 6e-19 Identities = 195/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| |||||||| ||| ||||| || |||||| ||||||||||| || || Sbjct 1194697 CATGCGATCCATTCCTTCCGTTATCGACGGTCTGAAGCCTGGTCAGCGCAAGGTCATCTA 1194638 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 |||||| |||||| |||| || | ||| ||||| || || | || || || Sbjct 1194637 CGCCTGTTTCAAGAGGAACTTGATCAAAGACCAAAAGGTTATTGAGTTGGCTGGTTATGT 1194578 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | ||||| || | || || ||||| || | ||||| ||| || || | || Sbjct 1194577 TTCTGAGCAGACCTCGTACCATCACGGTGAAGTTTCGCTTCAGCAGACGATCATTGGTCT 1194518 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || |||||||||||||| |||| ||| | |||| | || || || ||| | || || Sbjct 1194517 CGCACAGAACTTTGTCGGCTCAAACAACATCAACTGCTTGGAACCCTCCGGAAACTTCGG 1194458 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 | || || ||||||||| ||| ||||| ||| | |||||||| Sbjct 1194457 TTCTCGTCTTGCCGGTGGCTCGGACGCTGCCAGCCCTCGTTACAT 1194413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306422084960