Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq289 89.7 5e-13
>seq289
Length=429572
Score = 89.7 bits (98), Expect = 5e-13
Identities = 208/303 (69%), Gaps = 12/303 (4%)
Strand=Plus/Plus
Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378
|| || ||||||||||||| |||| || || || || || |||| ||| || ||
Sbjct 229677 GGCGTCAAGATCTGGGACGGAAACGGCTCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 229735
Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438
||| | || | | |||||| | || || || ||||| ||||| ||| |||| |||||
Sbjct 229736 CCACCGCG--AAGTTGGCGACCTCGGTCCTGTGTACGGCTTCCAATGGCGACATTTTGGC 229793
Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGT 34496
|| ||||| || | | ||| | |||||| |||| ||||| | ||||| || || |
Sbjct 229794 GCCGAGTA-CGTCGACTCCAAGACAGACTATACGGGCCAGGGCGTCGACCAACTCGCCG- 229851
Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556
| || ||| ||| | ||| |||||| | ||| | | ||| | | |||||||||
Sbjct 229852 AGGTCATCCACAAGCTCAAGACAAACCCTTACGACCGCCGCATCCTCCTCAGCGCGTGGA 229911
Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTAC 34615
|||| ||||| |||||| || || || ||||||| | ||| || ||||||
Sbjct 229912 ACCCCGCCGATCTTAAGAAGATGGCCCTGCCGCCCTGCCACA-TGTTTGCGCAGTTCTAC 229970
Query 34616 GTC 34618
|||
Sbjct 229971 GTC 229973
Score = 89.7 bits (98), Expect = 5e-13
Identities = 208/303 (69%), Gaps = 12/303 (4%)
Strand=Plus/Minus
Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785
||||||||| || ||| | ||||||| || || || |||||| ||||| |
Sbjct 229973 GACGTAGAACTGCGCAAACA-TGTGGCAGGGCGGCAGGGCCATCTTCTTAAGATCGGCGG 229915
Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845
|||||||||||| | | ||| | | ||| | |||||| ||| | ||| ||| |
Sbjct 229914 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTTGTCTTGAGCTTGTGGATGA 229855
Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903
| | | || || ||||| | ||||| |||| |||||| | ||| | | || |||||
Sbjct 229854 CCT-CGGCGAGTTGGTCGACGCCCTGGCCCGTATAGTCTGTCTTGGAGTCGACG-TACTC 229797
Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963
|| ||||| |||| ||| ||||| ||||| || || || | |||||| | | || |
Sbjct 229796 GGCGCCAAAATGTCGCCATTGGAAGCCGTACACAGGACCGAGGTCGCCAACTT--CGCGG 229739
Query 6964 TGGGA---ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020
||||| || ||| |||| || || || || || |||| ||||||||||||| ||
Sbjct 229738 TGGGAGAGGCCGACGC-TGTCGAGGAACTCGCGCGAGCCGTTTCCGTCCCAGATCTTGAC 229680
Query 7021 CCC 7023
||
Sbjct 229679 GCC 229677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448259273369760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |