Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq289 89.7 5e-13 >seq289 Length=429572 Score = 89.7 bits (98), Expect = 5e-13 Identities = 208/303 (69%), Gaps = 12/303 (4%) Strand=Plus/Plus Query 34322 GGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGT---TC 34378 || || ||||||||||||| |||| || || || || || |||| ||| || || Sbjct 229677 GGCGTCAAGATCTGGGACGGAAACGGCTCGCGCGAGTTCCTCGACA-GCGTCGGCCTCTC 229735 Query 34379 CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGG 34438 ||| | || | | |||||| | || || || ||||| ||||| ||| |||| ||||| Sbjct 229736 CCACCGCG--AAGTTGGCGACCTCGGTCCTGTGTACGGCTTCCAATGGCGACATTTTGGC 229793 Query 34439 GCGGAGTATCGGGGGAGCGAAG-CGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGT 34496 || ||||| || | | ||| | |||||| |||| ||||| | ||||| || || | Sbjct 229794 GCCGAGTA-CGTCGACTCCAAGACAGACTATACGGGCCAGGGCGTCGACCAACTCGCCG- 229851 Query 34497 ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGA 34556 | || ||| ||| | ||| |||||| | ||| | | ||| | | ||||||||| Sbjct 229852 AGGTCATCCACAAGCTCAAGACAAACCCTTACGACCGCCGCATCCTCCTCAGCGCGTGGA 229911 Query 34557 ACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGC-CAATTCTAC 34615 |||| ||||| |||||| || || || ||||||| | ||| || |||||| Sbjct 229912 ACCCCGCCGATCTTAAGAAGATGGCCCTGCCGCCCTGCCACA-TGTTTGCGCAGTTCTAC 229970 Query 34616 GTC 34618 ||| Sbjct 229971 GTC 229973 Score = 89.7 bits (98), Expect = 5e-13 Identities = 208/303 (69%), Gaps = 12/303 (4%) Strand=Plus/Minus Query 6727 GACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCG 6785 ||||||||| || ||| | ||||||| || || || |||||| ||||| | Sbjct 229973 GACGTAGAACTGCGCAAACA-TGTGGCAGGGCGGCAGGGCCATCTTCTTAAGATCGGCGG 229915 Query 6786 GGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCA 6845 |||||||||||| | | ||| | | ||| | |||||| ||| | ||| ||| | Sbjct 229914 GGTTCCACGCGCTGAGGAGGATGCGGCGGTCGTAAGGGTTTGTCTTGAGCTTGTGGATGA 229855 Query 6846 CGTACTGC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACTC 6903 | | | || || ||||| | ||||| |||| |||||| | ||| | | || ||||| Sbjct 229854 CCT-CGGCGAGTTGGTCGACGCCCTGGCCCGTATAGTCTGTCTTGGAGTCGACG-TACTC 229797 Query 6904 CGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGA 6963 || ||||| |||| ||| ||||| ||||| || || || | |||||| | | || | Sbjct 229796 GGCGCCAAAATGTCGCCATTGGAAGCCGTACACAGGACCGAGGTCGCCAACTT--CGCGG 229739 Query 6964 TGGGA---ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 ||||| || ||| |||| || || || || || |||| ||||||||||||| || Sbjct 229738 TGGGAGAGGCCGACGC-TGTCGAGGAACTCGCGCGAGCCGTTTCCGTCCCAGATCTTGAC 229680 Query 7021 CCC 7023 || Sbjct 229679 GCC 229677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259273369760