Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq547 158 3e-33 seq380 154 3e-32 seq487 147 5e-30 >seq547 Length=620828 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 191376 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 191435 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| || || | || ||||||||| Sbjct 191436 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 191495 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 191496 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 191555 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| || || | |||||| Sbjct 191556 TTACCCGTAAGGGTCTTCACGAAGATCTGCAT 191587 >seq380 Length=739652 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||||||||| || || ||||| || || | || || | ||||| Sbjct 523096 AGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCC 523037 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || ||||| || ||||| ||||||| || ||||||||| Sbjct 523036 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 522977 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||| || |||||||||||||| ||| Sbjct 522976 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTC 522917 Query 211083 TTTCCCGT 211090 || || || Sbjct 522916 TTGCCGGT 522909 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || || ||||| || || ||||| ||||| | | || | ||||| || || || Sbjct 523368 GTGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGAGTTG 523309 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 |||||| ||||| || || || || ||||| || |||| || ||||||||||||||||| Sbjct 523308 CTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTT 523249 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || ||||| |||||||| ||||| || ||||| || || || ||||| || || Sbjct 523248 GGACTTGACGTTGTCGATGGTATCAGATGACTCTACCTCAAGGGTAATGGTCTTGCCGGT 523189 Query 211091 GAGAGTCTTTAC 211102 ||| ||||| || Sbjct 523188 GAGTGTCTTGAC 523177 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || || || || || || ||||| || || || || | ||||| Sbjct 523832 AGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCC 523773 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || |||||||| ||||| ||||| || || | || |||||||| Sbjct 523772 TCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCT 523713 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| || || ||||| || || ||||| | || |||||| Sbjct 523712 TGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTC 523653 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||||||||| || || | ||||| Sbjct 523652 TTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 >seq487 Length=725459 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | |||||| | || || || ||||||||||| |||||||| Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||||||||||| || ||||||||||||||||| || || || ||| Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||||||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 202619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143712787670