Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq380 84.2 1e-11 >seq380 Length=739652 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || || || ||||| || || ||||| || | Sbjct 523393 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCA 523452 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || ||| || || || ||| | || || || || Sbjct 523453 GATACGATCGACAATGTCAAGTC-CAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCA 523511 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || ||| |||| || | || ||| | ||| ||||| Sbjct 523512 GCAGCGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAA 523571 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 523572 CATCCAGAAGGAATCAAC 523589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007301323464