Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq380 152 1e-31 seq285 141 2e-28 seq547 134 3e-26 seq313 111 4e-19 seq487 107 5e-18 seq516 102 2e-16 >seq380 Length=739652 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| ||||| || ||||| || || | ||||| ||| || ||| | ||||| Sbjct 523832 AGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCC 523773 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||| |||||||| ||||| |||||||| || ||||| ||||||||| Sbjct 523772 TCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCT 523713 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| || || |||||||| | || || || ||||| |||||| Sbjct 523712 TGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGTC 523653 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 523652 TTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| |||||||| || || || | ||||| |||| | || | ||||| Sbjct 523096 AGAACCAAGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTACGGCCATCC 523037 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| |||||||| || || || || |||||||| ||||| || |||||||| Sbjct 523036 TCGAGCTGCTTGCCAGCGAAAATCAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 522977 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 522976 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGAGTGATGGTC 522917 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 522916 TTGCCGGT 522909 >seq285 Length=2680 Score = 141 bits (156), Expect = 2e-28 Identities = 203/282 (72%), Gaps = 7/282 (2%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGA 7498 ||| ||||||||||| |||| | |||||||| ||||| |||||| || ||| | Sbjct 2386 AACCTTATATTTAATTTTTGCTTTATTTTCTGG-ATTATTAGGTACAGCTTTCTCTGTAT 2328 Query 7499 TTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAATAGCCAACTT 7557 | ||||| ||||||||| || || ||| |||| ||||| | ||| |||| | Sbjct 2327 TAATAAGATTAGAATTAAGTGGACCAGGTGTTCAATATATTTCGG----ATAACCAATTA 2272 Query 7558 TACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTT 7617 || || ||| ||||| ||||| ||| | | ||||| |||||| | |||||||| | Sbjct 2271 TATAATAGTATAATTACAGCGCACGCCATATTAATGATATTCTTTATGGTTATGCCTGCA 2212 Query 7618 ATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCT 7677 | ||||| ||||| || || | || | ||||||||| | || | ||||||||||| Sbjct 2211 TTAATAGGAGGTTTTGGTAACTTTTTAATGCCTTTAATGGTAGGAGGGCCTGATATGGCA 2152 Query 7678 TTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || || | || ||||||||||| |||||| |||| ||| Sbjct 2151 TTCCCTAGATTAAATAATATAAGTTTCTGATTATTACCACCT 2110 >seq547 Length=620828 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| |||||||| ||||| || || |||| ||||| |||| | || Sbjct 191366 ACGCAGACGCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 191425 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| | || || |||||||| || || || Sbjct 191426 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCC 191485 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || | Sbjct 191486 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAG 191545 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | || || | ||| | ||||| Sbjct 191546 GGTGATAGTCTTACCCGTAAGGGTCTTCACGAAGATCTGCAT 191587 >seq313 Length=3215 Score = 111 bits (122), Expect = 4e-19 Identities = 194/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| ||||||||||| |||| | |||||||| | ||||||| || ||| | | Sbjct 2700 AACATTATATTTAATTTTTGCTTTATTTTCTGGGTTATTAGGTACAGCCTTCTCTGTATT 2641 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || || ||||||||| || || ||| || ||||| | | ||| |||| | || Sbjct 2640 AATTAGATTAGAATTAAGTGGACCAGGTGTTC-AATAT--ATCTCTGATAACCAATTATA 2584 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || ||| || || ||||| || | | ||||| ||||| | |||||||| | | Sbjct 2583 TAATAGTATAATAACAGCGCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCATT 2524 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 ||||| ||||| || |||| | | ||||||||| | |||| ||||| |||||||| Sbjct 2523 AATAGGGGGTTTTGGTAATTTCCTTATGCCTTTAATGGTAGGTGGGCCTGACATGGCTTT 2464 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || | || || |||||||| ||| || |||| ||| Sbjct 2463 CCCTAGATTAAATAACATAAGTTTCTGACTATTACCACCT 2424 >seq487 Length=725459 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | || || || |||||||| || |||||||| Sbjct 202797 TTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATC 202738 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 202737 AAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 202678 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || ||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 202677 ATCGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 202619 >seq516 Length=1641395 Score = 102 bits (112), Expect = 2e-16 Identities = 174/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGT---CTTTGTAGACGATGAAGGGCATGCCCACC 193556 ||||||||| |||| || | |||||| | || || | ||||| || | || | Sbjct 1416276 TTCTGGTTGCTCTTGCG---GTTGGCGTGATCCTTATAAAGCATGAACGGGTTACCAGTC 1416332 Query 193557 TCCGCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCC 193616 || | || || |||||||| || ||| || | |||||| || | ||| | | | || Sbjct 1416333 TCGGTCTGTGCCTCGAGAATGGCATACCAGAGCTTTTGAGCCTTTAGGGTCTTGCGGCCC 1416392 Query 193617 TTTCCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCG 193676 || || || | ||||||||| || |||| ||||||| |||| || ||| ||| | Sbjct 1416393 TTGCCCTCGCGCTCGTACTTCTCATACAAGGCCTCAAACTCTTCGCCATAGCAGTCGGCA 1416452 Query 193677 AGACCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTC 193736 || ||||| || || || || | ||| |||| || |||| |||||||||||||| Sbjct 1416453 AGGCCGGGGCACTCGTTGGGACACATGAGCGTCCACTCGCCATTCTTTTCCACCCTCTTC 1416512 Query 193737 ATGAAGAGGTC 193747 |||||||| || Sbjct 1416513 ATGAAGAGATC 1416523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192522674147252