Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq380 123 6e-23 seq547 122 2e-22 >seq380 Length=739652 Score = 123 bits (136), Expect = 6e-23 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| |||||||| || || || || ||||||||||| |||| | ||| | Sbjct 523611 GAGGCGGAGGACGAGATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACG 523552 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || | ||||| ||||||||||| | | ||||||||| | | || || Sbjct 523551 ACCATCCTCCAATTGCTTT--CCGGCGAAGATCAATCGCTGCTGGTCGGGGGGAATACCC 523494 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || |||||| | || | | |||||| ||| || ||||| Sbjct 523493 TCCTTATCCTGAATCTTGGACTTGACATTGTCGATCGTATCTGAAGACTCAACCTCAAGG 523434 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||| | |||||| Sbjct 523433 GTGATTGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 523393 Score = 105 bits (116), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || |||||||| || || ||||||||||||| ||||| | ||||| || | Sbjct 523371 CAAG-TGGAGCGTAGACTCCTTCTGAATGTTGTAATCGGACAAAGTACGACCATCCTCGA 523313 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || |||| ||||||||| | | || || ||||| || || | Sbjct 523312 GTTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGA 523253 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | | || || |||||| ||||| ||||| || |||| Sbjct 523252 TCTTGGACTTGACGTTGTCGATGGTATCAGATGACTCTACCTCAAGGGTAATGGTCTTGC 523193 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||| ||||| |||| Sbjct 523192 CGGTGAGTGTCTTGACGA 523175 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| |||||||| || || || || || || |||||||| ||| | ||| | ||||| Sbjct 523833 GAGAACAAGATGGAGGGTTGATTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATC 523774 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | || || || |||||||| | |||||||| | | ||| || ||||| || Sbjct 523773 CTCCAACTGCTTACCAGCAAAGATAAGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTC 523714 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| || || || | || | ||||||| ||| || || | ||||| || Sbjct 523713 TTGAATCTTGGACTTCACGTTGTCAATCGTGTCTGACGACTCGACCTCCAACGTAATCGT 523654 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||||||||| ||||||| ||||| Sbjct 523653 CTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 523621 >seq547 Length=620828 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 191376 AGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 191435 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| | | ||||||||| | | ||| || ||||| || Sbjct 191436 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 191495 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| ||| ||| || ||||| || ||||| Sbjct 191496 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATAGTC 191555 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || ||||||||||||| |||||| Sbjct 191556 TTACCCGTAAGGGTCTTCACGAAGATCTGCAT 191587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812550902418