Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017-
01-05] 558 sequences; 52,387,045 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq380 147 5e-30
seq547 138 3e-27
seq487 131 4e-25
>seq380
Length=739652
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || ||||| || || || |||||||| ||||| || |||||
Sbjct 523396 CAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCAGAT 523455
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || ||||| ||||||||||| || || || || || || ||||||||
Sbjct 523456 ACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAG 523515
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | |||||||||||||| || | || ||||| | ||||| |||| || ||| ||
Sbjct 523516 CGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAACATC 523575
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||||||| || ||||| ||
Sbjct 523576 CAGAAGGAATCAACCCTTCATCTCGT 523601
Score = 143 bits (158), Expect = 6e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || |||||||| || || ||||| || | ||||| || ||||||
Sbjct 523624 CAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCAGAC 523683
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || |||||||| ||||| || || ||||| || |||||||||
Sbjct 523684 ACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAGCAA 523743
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| |||||||| || || || ||| | || ||||| | ||||| ||| || ||| |
Sbjct 523744 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAACATT 523803
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
|| || |||||||| || |||||||||
Sbjct 523804 CAGAAGGAATCAACCCTCCATCTTGTT 523830
Score = 118 bits (130), Expect = 3e-21
Identities = 139/187 (74%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||| |||||||| || ||| ||||||||||| || |||||
Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || ||||| |||||||| || || || ||||| || ||
Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| ||||| | || || |||| || ||| | || || || || || || ||
Sbjct 523029 CAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTCA- 523087
Query 178125 CTTGTTT 178131
|||| ||
Sbjct 523088 CTTGGTT 523094
>seq547
Length=620828
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || || || || || || |||||||| |||||||| || |||
Sbjct 191584 CAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 191525
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || ||||| || ||||||||
Sbjct 191524 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 191465
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||||||||| || |||||||| || || | || || |||| || ||| ||
Sbjct 191464 CGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 191405
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || || || ||
Sbjct 191404 CAGAAGGAGTCCACCCTCCACCTCGT 191379
>seq487
Length=725459
Score = 131 bits (144), Expect = 4e-25
Identities = 137/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || || || || || || |||||||| ||||| || ||| ||||| ||
Sbjct 202618 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGAT 202677
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| || ||||| ||||| |||||||| || || || ||||| |||||||| || |
Sbjct 202678 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTT 202737
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| || |||||||| || || | || ||| |||| || ||| |||| ||
Sbjct 202738 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAA 202797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203722594074252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |