Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20chlorophyti_20[genbank_20GCA_5F001937105.1_202017- 01-05] 558 sequences; 52,387,045 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq380 147 5e-30 seq547 138 3e-27 seq487 131 4e-25 >seq380 Length=739652 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || |||||||| ||||| || ||||| Sbjct 523396 CAGATTTTCGTCAAGACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAGTCTTCAGAT 523455 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| ||||||||||| || || || || || || |||||||| Sbjct 523456 ACGATCGACAATGTCAAGTCCAAGATTCAGGATAAGGAGGGTATTCCCCCCGACCAGCAG 523515 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||||||||| || | || ||||| | ||||| |||| || ||| || Sbjct 523516 CGATTGATCTTCGCCGGAAAGCAATTGGAGGATGGTCGTACTCTGTCCGACTACAACATC 523575 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || ||||| || Sbjct 523576 CAGAAGGAATCAACCCTTCATCTCGT 523601 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||| || || ||||| || | ||||| || |||||| Sbjct 523624 CAAATCTTCGTCAAGACTCTCACTGGCAAGACGATTACGTTGGAGGTCGAGTCGTCAGAC 523683 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||| ||||| || || ||||| || ||||||||| Sbjct 523684 ACGATTGACAACGTGAAGTCCAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAGCAA 523743 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| || || || ||| | || ||||| | ||||| ||| || ||| | Sbjct 523744 CGTCTTATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGCACTCTGAGCGACTACAACATT 523803 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || |||||||| || ||||||||| Sbjct 523804 CAGAAGGAATCAACCCTCCATCTTGTT 523830 Score = 118 bits (130), Expect = 3e-21 Identities = 139/187 (74%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| |||||||| || ||| ||||||||||| || ||||| Sbjct 522909 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAGTCC 522968 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || || ||||| |||||||| || || || ||||| || || Sbjct 522969 AAGATCCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCCTGATTTTCGCTGGCAAG 523028 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| ||||| | || || |||| || ||| | || || || || || || || Sbjct 523029 CAGCTCGAGGATGGCCGTACGCTCTCCGACTACAACATTCAGAAGGAGTCCACTCTTCA- 523087 Query 178125 CTTGTTT 178131 |||| || Sbjct 523088 CTTGGTT 523094 >seq547 Length=620828 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 191584 CAGATCTTCGTGAAGACCCTTACGGGTAAGACTATCACCCTTGAGGTGGAGTCTTCCGAC 191525 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || ||||| || |||||||| Sbjct 191524 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAG 191465 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| || |||||||| || || | || || |||| || ||| || Sbjct 191464 CGCTTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATC 191405 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 191404 CAGAAGGAGTCCACCCTCCACCTCGT 191379 >seq487 Length=725459 Score = 131 bits (144), Expect = 4e-25 Identities = 137/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||||||||| || || || || || || |||||||| ||||| || ||| ||||| || Sbjct 202618 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACGAT 202677 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || ||||| |||||||| || | Sbjct 202678 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCTT 202737 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| || |||||||| || || | || ||| |||| || ||| |||| || Sbjct 202738 GATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAA 202797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722594074252