Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq3337 138 2e-27
>seq3337
Length=46210
Score = 138 bits (152), Expect = 2e-27
Identities = 278/407 (68%), Gaps = 8/407 (2%)
Strand=Plus/Minus
Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296
||||||| ||||| ||| ||| | ||||| || || | || |||||| |||
Sbjct 4481 CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCA 4422
Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355
|| ||| ||||||||||| || || | | |||| | || ||||||| | ||| ||
Sbjct 4421 TCTCTCGTGACGAGGGTCTGCA-CACCGACTTCGCCTGTCTCTTGTATTCCCACCTCAAG 4363
Query 230356 AACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAA 230412
||| | ||| | || ||| | | | |||||| || || || | | ||
Sbjct 4362 AACCGCC--CCAG-CAAGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAG 4306
Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472
|||||||| | || ||| |||| || ||| | ||||||||| | | || |||
Sbjct 4305 CAGGAGTTCCTGACGGAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATG 4246
Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532
|||||||| || ||||| |||||||| | ||||||| ||||| |||| || ||
Sbjct 4245 AAGCAGTACATTGAGTTCGTTGCCGACCGTCTCCTTGTTGCGCTTGGCAACGAAAAGGTC 4186
Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592
||||| ||| |||||||| | || |||||| ||| || || || |||||||||
Sbjct 4185 TACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAAC 4126
Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639
|||||||| |||||||| ||||| || | | ||||||| |||||
Sbjct 4125 TTCTTCGAGAAGCGTGTTGCCGACTACCAAAAGGCTGGTGTCATGAA 4079
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057764934413540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |