Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq3337 138 2e-27 >seq3337 Length=46210 Score = 138 bits (152), Expect = 2e-27 Identities = 278/407 (68%), Gaps = 8/407 (2%) Strand=Plus/Minus Query 230237 CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCA 230296 ||||||| ||||| ||| ||| | ||||| || || | || |||||| ||| Sbjct 4481 CCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCA 4422 Query 230297 TCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAG 230355 || ||| ||||||||||| || || | | |||| | || ||||||| | ||| || Sbjct 4421 TCTCTCGTGACGAGGGTCTGCA-CACCGACTTCGCCTGTCTCTTGTATTCCCACCTCAAG 4363 Query 230356 AACAAGCTACCATTCGAGACGGTCA---AACAAATCATTACAGAAGCAGTTGAAAACGAA 230412 ||| | ||| | || ||| | | | |||||| || || || | | || Sbjct 4362 AACCGCC--CCAG-CAAGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAG 4306 Query 230413 AAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAACTTATG 230472 |||||||| | || ||| |||| || ||| | ||||||||| | | || ||| Sbjct 4305 CAGGAGTTCCTGACGGAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATG 4246 Query 230473 GGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTG 230532 |||||||| || ||||| |||||||| | ||||||| ||||| |||| || || Sbjct 4245 AAGCAGTACATTGAGTTCGTTGCCGACCGTCTCCTTGTTGCGCTTGGCAACGAAAAGGTC 4186 Query 230533 TACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAAC 230592 ||||| ||| |||||||| | || |||||| ||| || || || ||||||||| Sbjct 4185 TACAAGTCTTCCAACCCCTTCGACTTCATGGAGAACATCTCCCTGGGCGGCAAGACCAAC 4126 Query 230593 TTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATGAA 230639 |||||||| |||||||| ||||| || | | ||||||| ||||| Sbjct 4125 TTCTTCGAGAAGCGTGTTGCCGACTACCAAAAGGCTGGTGTCATGAA 4079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057764934413540