Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq3337 84.2 2e-11
>seq3337
Length=46210
Score = 84.2 bits (92), Expect = 2e-11
Identities = 192/287 (67%), Gaps = 3/287 (1%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || || |||||||| || ||| | ||||| || ||||||||||| |||||
Sbjct 4718 ATGTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAATGGATGTTCTCCATCATAATCTGG 4777
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353
|| || || || || |||||||| | | |||||| || || ||| || || | |
Sbjct 4778 AAGCCATAGAAACAGCGGGCTTCGGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAG 4837
Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413
|| || || |||||||||||| ||||| || || || | || ||| ||||| ||
Sbjct 4838 TTCTCATTGACGATGCCGTCGGAAGCGGCAAAGAAGGCGAGAATGTGCGAGATGAAGTAC 4897
Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470
|| || || || || | | |||||| | | ||| ||||| | || | ||
Sbjct 4898 TTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCAATCTCC 4957
Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517
|| | |||||| ||| ||| | ||||| || ||||| | ||| ||
Sbjct 4958 TCTGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 5004
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517517406703440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |