Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3337 84.2 2e-11 >seq3337 Length=46210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||||||| || ||| | ||||| || ||||||||||| ||||| Sbjct 4718 ATGTAGGTGTCGATGAGCAGCGAGTAGGTCTCGGAATGGATGTTCTCCATCATAATCTGG 4777 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || || || || || |||||||| | | |||||| || || ||| || || | | Sbjct 4778 AAGCCATAGAAACAGCGGGCTTCGGGCACTTGAACCTCGCCGCTGAAGCGCTCGACCAAG 4837 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 || || || |||||||||||| ||||| || || || | || ||| ||||| || Sbjct 4838 TTCTCATTGACGATGCCGTCGGAAGCGGCAAAGAAGGCGAGAATGTGCGAGATGAAGTAC 4897 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || || | | |||||| | | ||| ||||| | || | || Sbjct 4898 TTCTCATCCTCGTTGATCTTGTTGTTCCAGTCGTGCAGATCCTTGGACAAGTCAATCTCC 4957 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || | |||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 4958 TCTGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 5004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517517406703440