Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3337 176 5e-39
seq1916 145 8e-30
seq3878 116 4e-21
seq3617 114 1e-20
>seq3337
Length=46210
Score = 176 bits (194), Expect = 5e-39
Identities = 315/455 (69%), Gaps = 4/455 (1%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040
|||||||||| ||||| || ||||| || |||| | || |||||| | |||||
Sbjct 4592 AGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCCCAGCGC 4534
Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100
||||| ||||| || |||||||||||| |||||||| || ||||| |||| ||
Sbjct 4533 CTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTTC 4474
Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160
||||||||||| || || |||||||| || ||||| ||| ||||||||||||||| |
Sbjct 4473 TGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 4414
Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220
|||||||||||||| |||||| |||||| | ||| || | | | || ||
Sbjct 4413 GACGAGGGTCTGCACACCGACTTCGCCTGTCTCTTGTATTCCCACCTCAAGAACCGCCCC 4354
Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280
||| | | || ||| ||| | ||| || ||| || |||||| |||||
Sbjct 4353 AGCAAGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTG 4294
Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339
|| || || || || |||| ||||| || | || | | | |||| ||| |||||
Sbjct 4293 ACGGAGGCTCTTCC-TTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 4235
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
|||||||| |||||| | || || | | ||| | | || ||| |||||| | |
Sbjct 4234 TGAGTTCGTTGCCGACCGTCTCCTTGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTC 4175
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434
|||||| | ||||| ||| | ||||||| |||
Sbjct 4174 CAACCCCTTCGACTTCATGGAGAACATCTCCCTGG 4140
Score = 161 bits (178), Expect = 1e-34
Identities = 207/285 (73%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||||| |||||| | ||| ||
Sbjct 5004 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACTTG 4945
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752
|||||||| | ||||||| | | || |||| | ||| | |||||| |
Sbjct 4944 TCCAAGGATCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 4885
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||| | || ||||| || ||||| ||||||||||||||| ||||| ||||||||||
Sbjct 4884 CACATTCTCGCCTTCTTTGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 4825
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| ||||| || ||| |||| || || || ||||| ||||| ||||| |||
Sbjct 4824 TTCAGCGGCGAGGTTCAAGTGCCCGAAGCCCGCTGTTTCTATGGCTTCCAGATTATGATG 4765
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | || || || | || ||| ||||||||||| |||
Sbjct 4764 GAGAACATCCATTCCGAGACCTACTCGCTGCTCATCGACACCTAC 4720
>seq1916
Length=1946
Score = 145 bits (160), Expect = 8e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||||||||| || |||||| | || || || | ||
Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||||| || || | ||||| |||||||||||| | ||||||
Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || |||| ||| || || ||||| || |||| |||||||| ||||||||||
Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919
|||||||||||| |||| || || || || | ||| || | || || ||
Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGTGG 1133
>seq3878
Length=33396
Score = 116 bits (128), Expect = 4e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || ||||| || || || || ||||| | || || ||| | |
Sbjct 29134 ATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCA 29193
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| ||||| ||||||||||| | |||||
Sbjct 29194 GACACCATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 29252
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || ||||| ||||| || || | || || || |||||||||
Sbjct 29253 GCAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAA 29312
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| | || || || || || | ||| || | || ||
Sbjct 29313 CATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGG 29360
Score = 111 bits (122), Expect = 2e-19
Identities = 134/180 (74%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| |||||||| | || ||||| || | || | | | | |||| | |||
Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACG-TGAAGTC 28704
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| ||||| ||||| | || ||||| || || |||| ||| |||||
Sbjct 28705 CAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAA 28764
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| ||||||||| |||||||||||||||||||||| |||| || ||
Sbjct 28765 GCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 28824
Score = 111 bits (122), Expect = 2e-19
Identities = 133/181 (73%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| |||||||| |||| || || || |||||| | |
Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||||||||| | ||||||||||| | |
Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| || ||||| ||||| || || | || || || ||||||||||||||||||||
Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095
Query 40880 A 40880
|
Sbjct 29096 A 29096
Score = 102 bits (112), Expect = 8e-17
Identities = 117/156 (75%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| ||||| ||||| | ||||| ||||| |||||| | |||||||| || || ||
Sbjct 29434 AACG-TCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTGAT 29492
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
| ||| || || || ||||| |||| |||||||| | ||| |||||||||||||||||
Sbjct 29493 TTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGA 29552
Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
| | || || || || || | || || | |||||
Sbjct 29553 GTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGG 29588
>seq3617
Length=84999
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || |||||||| ||||| ||| | || ||||| || | |||| |
Sbjct 45419 TTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 45360
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| |||||||||||| | |||||||| || |
Sbjct 45359 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 45300
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||||
Sbjct 45299 ATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAG 45240
Query 40879 G 40879
|
Sbjct 45239 G 45239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515191133434080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |