Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3337 176 5e-39 seq1916 145 8e-30 seq3878 116 4e-21 seq3617 114 1e-20 >seq3337 Length=46210 Score = 176 bits (194), Expect = 5e-39 Identities = 315/455 (69%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGC 117040 |||||||||| ||||| || ||||| || |||| | || |||||| | ||||| Sbjct 4592 AGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGAT-GAGAAGTCCTCCTTCGCCCAGCGC 4534 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 ||||| ||||| || |||||||||||| |||||||| || ||||| |||| || Sbjct 4533 CTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTTC 4474 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||||||||| || || |||||||| || ||||| ||| ||||||||||||||| | Sbjct 4473 TGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 4414 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 |||||||||||||| |||||| |||||| | ||| || | | | || || Sbjct 4413 GACGAGGGTCTGCACACCGACTTCGCCTGTCTCTTGTATTCCCACCTCAAGAACCGCCCC 4354 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | | || ||| ||| | ||| || ||| || |||||| ||||| Sbjct 4353 AGCAAGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAGTTCCTG 4294 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACAT 117339 || || || || || |||| ||||| || | || | | | |||| ||| ||||| Sbjct 4293 ACGGAGGCTCTTCC-TTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACAT 4235 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| |||||| | || || | | ||| | | || ||| |||||| | | Sbjct 4234 TGAGTTCGTTGCCGACCGTCTCCTTGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTC 4175 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||||| | ||||| ||| | ||||||| ||| Sbjct 4174 CAACCCCTTCGACTTCATGGAGAACATCTCCCTGG 4140 Score = 161 bits (178), Expect = 1e-34 Identities = 207/285 (73%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||||| |||||| | ||| || Sbjct 5004 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACTTG 4945 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTGA---ACGACAACGAGCGCCATTTCATCAAG 116752 |||||||| | ||||||| | | || |||| | ||| | |||||| | Sbjct 4944 TCCAAGGATCTGCACGACTGGAACAACAAGATCAACGAGGATGAGAAGTACTTCATCTCG 4885 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| || ||||| ||||||||||||||| ||||| |||||||||| Sbjct 4884 CACATTCTCGCCTTCTTTGCCGCTTCCGACGGCATCGTCAATGAGAACTTGGTCGAGCGC 4825 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| || ||| |||| || || || ||||| ||||| ||||| ||| Sbjct 4824 TTCAGCGGCGAGGTTCAAGTGCCCGAAGCCCGCTGTTTCTATGGCTTCCAGATTATGATG 4765 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | || || || | || ||| ||||||||||| ||| Sbjct 4764 GAGAACATCCATTCCGAGACCTACTCGCTGCTCATCGACACCTAC 4720 >seq1916 Length=1946 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| || || ||||| || |||| |||||||| |||||||||| Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 |||||||||||| |||| || || || || | ||| || | || || || Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGTGG 1133 >seq3878 Length=33396 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || ||||| | || || ||| | | Sbjct 29134 ATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCA 29193 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| ||||||||||| | ||||| Sbjct 29194 GACACCATTGACAACG-TCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 29252 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| || ||||| ||||| || || | || || || ||||||||| Sbjct 29253 GCAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAA 29312 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || || || || || | ||| || | || || Sbjct 29313 CATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGG 29360 Score = 111 bits (122), Expect = 2e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| |||||||| | || ||||| || | || | | | | |||| | ||| Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACG-TGAAGTC 28704 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| ||||| | || ||||| || || |||| ||| ||||| Sbjct 28705 CAAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAA 28764 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||||||| |||||||||||||||||||||| |||| || || Sbjct 28765 GCAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 28824 Score = 111 bits (122), Expect = 2e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| |||||||| |||| || || || |||||| | | Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975 Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819 | | ||||| || || | ||||| ||||||||||| | ||||||||||| | | Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035 Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879 ||| || ||||| ||||| || || | || || || |||||||||||||||||||| Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095 Query 40880 A 40880 | Sbjct 29096 A 29096 Score = 102 bits (112), Expect = 8e-17 Identities = 117/156 (75%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| ||||| | ||||| ||||| |||||| | |||||||| || || || Sbjct 29434 AACG-TCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTGAT 29492 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 | ||| || || || ||||| |||| |||||||| | ||| ||||||||||||||||| Sbjct 29493 TTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACAACATCCAGAAGGA 29552 Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | | || || || || || | || || | ||||| Sbjct 29553 GTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGG 29588 >seq3617 Length=84999 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||| ||| | || ||||| || | |||| | Sbjct 45419 TTCGTGAAGACCCTGACGGGCAAGACCATTACCCTTGAGGTCGAGTCCTCGGACACGATC 45360 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||||||| | |||||||| || | Sbjct 45359 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCTTG 45300 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 45299 ATCTTCGCCGGCAAGCAGCTTGAGGATGGACGCACCCTGTCCGACTACAACATCCAGAAG 45240 Query 40879 G 40879 | Sbjct 45239 G 45239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515191133434080