Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq245 118 2e-21 seq1559 105 1e-17 >seq245 Length=98725 Score = 118 bits (130), Expect = 2e-21 Identities = 381/586 (65%), Gaps = 23/586 (4%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 ||||| || |||||| ||| || ||||| || |||| |||||||| | || || Sbjct 89226 TTCAAGACCTTGGAGAGATCTTACCTCCTGAAGCTTGACGGCAAGATTGCCGAGAGACCC 89285 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTG 248949 ||||||||| | ||||| || |||||||| || | || |||| | ||| |||| Sbjct 89286 CAGCACATGATCATGCGTGTTGCTGTCGGAAT---CTGGGGCGACAACGTTGAGCGCGTT 89342 Query 248950 CTCGAGACGTACACCGGAATGA-GTGAACGCTGGATGACACATGCCACACCGACGCTCTT 249008 ||||||| |||| | ||| | | | | | | || || ||| | || || ||||| Sbjct 89343 ATCGAGACCTACAACCTGATGTCGAGCAAGTTCT-TCACCCACGCCTCTCCCACACTCTT 89401 Query 249009 CAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGA 249068 ||||||||||||| | | |||||| ||| || || ||| | | ||| | || || Sbjct 89402 CAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCTTGTTTCCTTGTCGATATGAAGGAGGA 89461 Query 249069 CTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGC 249125 |||| |||| || || || ||||| || | |||| || | ||| || || | || Sbjct 89462 CTCTATCGAGGGTATCTACGACACCCTCA---AGACCTGTGCTATGATCTCCAAGATGGC 89518 Query 249126 GGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTAC 249185 || || || |||||| |||| | |||||| || | || || ||||| || || Sbjct 89519 TGGTGGCATTGGTCTCAACGTCCACCGCATCCGCGCTACCGGCTCTTACATTGCTGGCAC 89578 Query 249186 AAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTT 249245 || || | | | || |||| ||| | || || ||| | ||| ||| | | Sbjct 89579 CAACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACAACACTGCCCGCTA 89638 Query 249246 CATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTG 249299 | || |||||| ||| ||||| || | || ||||| || | || || Sbjct 89639 CGTCGACCAGGGCGGAAACAAGCGCC---CCGGTGCTTTTGCCATCTACCTCGAGCCTTG 89695 Query 249300 GCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAG 249359 |||||| ||| |||| || ||| |||| || |||||| | || || ||| | | Sbjct 89696 GCACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGGAGGAGGTCCG 89755 Query 249360 AGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 || |||||||| || || ||| ||| || |||| | |||||| Sbjct 89756 CGCTCGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATG 89801 >seq1559 Length=209146 Score = 105 bits (116), Expect = 1e-17 Identities = 130/178 (73%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| || ||| || | ||||| |||||||| || | |||||| ||||||||| Sbjct 31225 TGCCCGCCCTTTAAGATCATCATCCTTGACGAGGCCGATTCAATGACGCAGGACGCGCAG 31284 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 ||||||||| || || |||||||| || | | ||||| || ||||| | ||| Sbjct 31285 AGCGCCCTCCGTCGGACCATGGAGACATACAGCAAGATCACGCGGTTCTGCCTCATCTGC 31344 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 |||||||| || ||||| | ||| || ||| ||| ||| ||||||||| |||| Sbjct 31345 AACTACGTCACGCGCATCATTGACCCTCTTGCTAGTCGTTGCAGCAAGTTTCGCTTCA 31402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073706444239744