Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3878 131 1e-25 seq1916 127 2e-24 >seq3878 Length=33396 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||| ||| |||| |||| |||| |||||||| ||||| ||||| Sbjct 29553 CTCCTTCTGGATGTTGTAATCGCTCAGGGTGCGACCGTCCTCCAGTTGCTTTCCAGCGAA 29494 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| || || | |||||||||||| ||||| ||| || Sbjct 29493 AATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTGGACTTGACGTT 29434 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | |||| | ||| ||||||| ||||||||||| || |||| ||||| || Sbjct 29433 GTCGATAGTGTCAGAAGACTCAACCTCCAACGTAATCGTCTTTCCGGTCAAGGTCTTGAC 29374 Query 45325 AAAGATTTGCAT 45336 |||||||||||| Sbjct 29373 AAAGATTTGCAT 29362 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| |||||||||||| || ||| |||| || Sbjct 28830 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 28771 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| || | ||||| || |||||||| | ||||||||||||| Sbjct 28770 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCGGGAGGGATACCCTCCTTGTCC 28714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||| ||| || | || || || || || ||||| || Sbjct 29324 TCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAG 29265 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||||||||| | |||||||||||| ||| || ||| || Sbjct 29264 ATCAGGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 29205 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| || ||||| | || |||||||| || || || ||||| || Sbjct 29204 TCAATGGTGTCTGATGATTCAACCTCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACG 29145 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 29144 AAGATCTGCAT 29134 >seq1916 Length=1946 Score = 127 bits (140), Expect = 2e-24 Identities = 159/217 (73%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| ||||||||| |||||||||||| ||| ||| |||| || Sbjct 1154 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 1213 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 1214 AGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 1273 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| || |||||| Sbjct 1274 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 1333 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || ||||| || ||||| |||||| |||||| Sbjct 1334 CCCGTGAGGGTCTTGACGAAGATCTGCATGATTGCCT 1370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395054216321518