Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq245 390 1e-103 seq3878 122 8e-23 seq3337 114 1e-20 seq1916 111 1e-19 >seq245 Length=98725 Score = 390 bits (432), Expect = 1e-103 Identities = 1230/1890 (65%), Gaps = 39/1890 (2%) Strand=Plus/Minus Query 22104 TCTTG-TCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACAT 22161 ||||| || || || ||||| || |||| | || || | | ||||| || || ||||| Sbjct 91051 TCTTGGTCGACAGTGAACTGAATAGGCGCT-GCAGCAGCCTGCGTGCGCAGGTAGTACAT 90993 Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACT 22221 |||||||||||| || | |||||| | || || || || | || || | | Sbjct 90992 GCCCGTCTTCAGTCCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGT 90933 Query 22222 CGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 ||| | ||||| | |||| |||||| ||| ||||| || || || || ||||| Sbjct 90932 CGGGTCTTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCACGGTCGGC 90873 Query 22282 GGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341 ||||| | | | || ||| || |||||||| || ||||||||||| | ||| Sbjct 90872 AGCCATTTGCACAACGGTGCGCTGGGAGATTTCCCAAACAGTCTTGTACAGCGCCTTGAC 90813 Query 22342 CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 ||| || || ||| |||| | || ||||| | | ||||| || || Sbjct 90812 CTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATGCGGTTCTT 90753 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || | || |||||| || ||| || | || || | || | |||| || || Sbjct 90752 CATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGAC 90693 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 ||| |||||||| | | ||| || || |||||||||||||| ||| | |||||||| | Sbjct 90692 TTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGAAGCA 90633 Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581 || ||||| |||| ||||||| ||| || |||||||| ||||| | || || || Sbjct 90632 CTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGA 90573 Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCG 22639 ||| | | ||||||| |||| | | || ||| ||| ||||||||| ||||| Sbjct 90572 GTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAATC--CCAGTCCCAGAGATCC 90515 Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699 || || | ||||| |||||| ||||| || | | ||| || | ||| || Sbjct 90514 GAGGGTTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCC 90458 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC-- 22757 || ||||| | || || || | | ||| | | | | | | | | || Sbjct 90457 TCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAACTG--AACCGACATGGTAAGGGCAG 90400 Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817 ||| || || ||||||||||| |||||||| | || || || | ||| | | Sbjct 90399 CGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCGAAGG 90340 Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877 |||| || | || ||| || || || | ||||||||| || | ||| || || |||| Sbjct 90339 GCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGT 90280 Query 22878 TTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933 || || || |||| ||| | | || || || |||||| || Sbjct 90279 GGCGCATGTTG----CTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACATCGATGATT 90224 Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG 22993 ||||| | ||| | || | | || | | ||||||||||| Sbjct 90223 CTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCGTAAACA 90164 Query 22994 CCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACC 23050 ||| ||||| |||| || || | || | |||||| || ||||| || || ||| Sbjct 90163 CCCTCGTTGTAGTCAACGAAGGTGGGCAGCGCAAGCGAGGCCAGGTTGCACACTGCGACC 90104 Query 23051 TCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTT---ATCG 23105 || || ||| || |||||| | || || || ||||| ||| | || || | Sbjct 90103 TCATCA--GGAGCGCAGTACTCAATGATCTCAGTGCATAGGTTGG---AGTTACGGATGG 90049 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || |||||||||| || || ||| | ||||||||||||||| | || Sbjct 90048 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATAAAGGGGT 89989 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225 | || |||||| || | ||||| ||| || ||| | | || || | | ||| Sbjct 89988 TACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGG-GTC 89930 Query 23226 GCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA 23283 || |||| ||| | ||||||||| | ||||| || || ||||| | ||||| Sbjct 89929 TTGCG-ACCTTTGCCCATCTGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTA 89871 Query 23284 ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTC 23343 |||||||| || || || | | | || ||||||||| |||| || || || Sbjct 89870 GCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTC 89811 Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403 || | |||| || ||||| || ||||| || ||| || || || || ||||| || Sbjct 89810 CACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAGAAATAGGTCACGAGCGCGGAC 89751 Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463 |||||| || || |||||| || |||||| ||||| || || || || ||||| || Sbjct 89750 CTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCAAATACATCAGCGTGCCAAGG 89691 Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523 ||||||||| | |||||| || || || | ||| || |||||||| |||||||| ||||| Sbjct 89690 CTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGGGC 89631 Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583 ||||||||| | || | ||||| || |||| ||||| || | |||| ||| || Sbjct 89630 AGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTTAGAGGTGCCGTTGGTGCCAGC 89571 Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643 | || || | || || | | ||| |||| || ||| ||||| || || || Sbjct 89570 AATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTT 89511 Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703 || ||||| || || || || ||||||||||| |||||||| |||||| || | Sbjct 89510 GGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCAT 89451 Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763 |||| | |||||| || |||| ||||| | ||| ||| |||| ||| ||||| || Sbjct 89450 ATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGTACCGGCGTTGAAGAGTGTGGG 89391 Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823 |||||| || ||| | ||||||| || ||||| || ||||| || |||| Sbjct 89390 AGAGGCGTGGGTGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATAACGCGCTCAAC 89331 Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883 || || || || |||| || || ||||| ||||||| || ||||||||| | | Sbjct 89330 GTTGTCGCCCCAGATTCCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAAT 89271 Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 ||||| || || | || || || | | || || || || || || || | || Sbjct 89270 CTTGCCGTCAAGCTTCAGGAGGTAAGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTA 89211 Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||| ||||| || |||| || ||||| || Sbjct 89210 GTTGAAGTCGCGGTCGTAGACGATGGCAGA 89181 >seq3878 Length=33396 Score = 122 bits (134), Expect = 8e-23 Identities = 176/246 (72%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || || ||||| || | || ||||| | || Sbjct 29362 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTTCT 29421 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | ||||| | ||| |||||||| || | || || |||||| Sbjct 29422 GACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 29481 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || |||||||| || || |||| ||| | || |||||||||| ||| Sbjct 29482 CAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACAAC 29541 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430 || || || || |||||||| || || || ||| | ||| | |||||| || ||||| || Sbjct 29542 ATCCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGGTCAGTAAGCGATG 29601 Query 31431 ACGTCG 31436 | ||| Sbjct 29602 GCTTCG 29607 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || |||||||| | || |||||| | || Sbjct 29134 ATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCA 29193 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| ||| | || ||||||||| Sbjct 29194 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 29253 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || || || ||||| ||| | || || ||| || ||| || ||| Sbjct 29254 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 29313 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| ||||| || || || ||| | ||| | || |||| Sbjct 29314 ATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGGTA 29362 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || ||||| || ||||| |||| || || | ||||||| ||| Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975 Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322 | | ||||| | || ||||||||| ||| | || ||||||||||| || | | Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035 Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382 | || |||||||| ||| | || || ||| || ||| || ||||| || || | Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095 Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| ||||| || |||| ||| | || | || |||| Sbjct 29096 AATCTACTCTCCACTTGGTGCTTCGTCTCCGTGGTGGTA 29134 >seq3337 Length=46210 Score = 114 bits (126), Expect = 1e-20 Identities = 256/381 (67%), Gaps = 10/381 (3%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973 ||||||||| || ||| | |||| ||||| | | | | || | |||||| || | Sbjct 4594 CAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 4535 Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033 || | || || || |||||||| || || |||||| || ||| || | || || Sbjct 4534 CCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTT 4475 Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093 ||| | ||||| || || || ||||| || ||||| || ||||||| | || || || Sbjct 4474 CTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 4415 Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153 ||||||||||| || || || || || || || |||| || ||| |||| |||| Sbjct 4414 TGACGAGGGTCTGCACACCGACTTCGCCTGTCTCTTGTATTCCCAC---CTCAA-GAACC 4359 Query 58154 GACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | | | | | || ||| |||||| || ||| || ||| ||| || | ||| Sbjct 4358 GCCCCAGCA-AGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAG 4300 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | || || || || || ||| ||||||| |||||| | ||||| || Sbjct 4299 TTCCTGACGGAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 4240 Query 58269 TACATTGAGTTTGTTGCCGAC 58289 ||||||||||| ||||||||| Sbjct 4239 TACATTGAGTTCGTTGCCGAC 4219 >seq1916 Length=1946 Score = 111 bits (122), Expect = 1e-19 Identities = 171/244 (70%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 1367 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 1308 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 1307 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 1248 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||| || || ||| | || ||| || || ||| | Sbjct 1247 ACCAGCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 1188 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || || || || || || || ||||| ||| | ||| | || ||| ||| Sbjct 1187 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGTGGTAAGA 1128 Query 31424 AGCG 31427 |||| Sbjct 1127 AGCG 1124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445742116875360