Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq245 390 1e-103
seq3878 122 8e-23
seq3337 114 1e-20
seq1916 111 1e-19
>seq245
Length=98725
Score = 390 bits (432), Expect = 1e-103
Identities = 1230/1890 (65%), Gaps = 39/1890 (2%)
Strand=Plus/Minus
Query 22104 TCTTG-TCCACTGTAAACTGTAT-GGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACAT 22161
||||| || || || ||||| || |||| | || || | | ||||| || || |||||
Sbjct 91051 TCTTGGTCGACAGTGAACTGAATAGGCGCT-GCAGCAGCCTGCGTGCGCAGGTAGTACAT 90993
Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACT 22221
|||||||||||| || | |||||| | || || || || | || || | |
Sbjct 90992 GCCCGTCTTCAGTCCGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATAGT 90933
Query 22222 CGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281
||| | ||||| | |||| |||||| ||| ||||| || || || || |||||
Sbjct 90932 CGGGTCTTTCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCACGGTCGGC 90873
Query 22282 GGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341
||||| | | | || ||| || |||||||| || ||||||||||| | |||
Sbjct 90872 AGCCATTTGCACAACGGTGCGCTGGGAGATTTCCCAAACAGTCTTGTACAGCGCCTTGAC 90813
Query 22342 CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401
||| || || ||| |||| | || ||||| | | ||||| || ||
Sbjct 90812 CTCGGTAGGAATGTTGGGGATGTTCTGAATAGAACCGTTCTCGGCAATGATGCGGTTCTT 90753
Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461
|| | || |||||| || ||| || | || || | || | |||| || ||
Sbjct 90752 CATAGCGTCAGACCACAAGCCCATGTCGACGAGGTCCTTCAAGAGCCAAGGGTTGACGAC 90693
Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521
||| |||||||| | | ||| || || |||||||||||||| ||| | |||||||| |
Sbjct 90692 TTGGAACTCGCCAGCAAGGACACGACGCTGGTAAATGTTGGAGGTGTAAGGTTCGAAGCA 90633
Query 22522 TTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGA 22581
|| ||||| |||| ||||||| ||| || |||||||| ||||| | || || ||
Sbjct 90632 CTCGTTGTTACCCAAGATCTGAGAGGTGCTGGCAGTCGGCATGGGCGCGACGAGCAGAGA 90573
Query 22582 GTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCG 22639
||| | | ||||||| |||| | | || ||| ||| ||||||||| |||||
Sbjct 90572 GTTGCGGACACCGTGCTGCTTGATCTGCTCCTTCAGAGAATC--CCAGTCCCAGAGATCC 90515
Query 22640 GACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCT 22699
|| || | ||||| |||||| ||||| || | | ||| || | ||| ||
Sbjct 90514 GAGGGTTTGACATT---CCACATGTCGTACTGGAGGATGCCCTGAGAAACAGGGGAACCC 90458
Query 22700 TCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGC-- 22757
|| ||||| | || || || | | ||| | | | | | | | | ||
Sbjct 90457 TCATACGTCTGATAGGGGCCCTCCTCCTTGGCCAACTG--AACCGACATGGTAAGGGCAG 90400
Query 22758 CGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACG 22817
||| || || ||||||||||| |||||||| | || || || | ||| | |
Sbjct 90399 CGTGGTAGATTGTCTCGAAGATCTTCTTGTTGAGGTCACGAGCTTCGGGGGACTCGAAGG 90340
Query 22818 GCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGT 22877
|||| || | || ||| || || || | ||||||||| || | ||| || || ||||
Sbjct 90339 GCATGCGGAGGGCCAAGAAGGCATCGGCAAGACCCTGAACACCGAGACCAATGGGGCGGT 90280
Query 22878 TTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATTGTT 22933
|| || || |||| ||| | | || || || |||||| ||
Sbjct 90279 GGCGCATGTTG----CTGTTGCGAGCCTCCTGGACCGGGTAGTGGTTGACATCGATGATT 90224
Query 22934 CTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG 22993
||||| | ||| | || | | || | | |||||||||||
Sbjct 90223 CTGTTGAGGTTGCGAACGACGACCTGGGTGACCTCGTGAAGCTTCTGGAAGTCGTAAACA 90164
Query 22994 CCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACC 23050
||| ||||| |||| || || | || | |||||| || ||||| || || |||
Sbjct 90163 CCCTCGTTGTAGTCAACGAAGGTGGGCAGCGCAAGCGAGGCCAGGTTGCACACTGCGACC 90104
Query 23051 TCGTCTTTGGA-CGT-GTACTCTACAATTTCGGTACATAGATTGCTACACTTT---ATCG 23105
|| || ||| || |||||| | || || || ||||| ||| | || || |
Sbjct 90103 TCATCA--GGAGCGCAGTACTCAATGATCTCAGTGCATAGGTTGG---AGTTACGGATGG 90049
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
| |||| || |||||||||| || || ||| | ||||||||||||||| | ||
Sbjct 90048 TACCCAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCTTGTAGAGCATAAAGGGGT 89989
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTC 23225
| || |||||| || | ||||| ||| || ||| | | || || | | |||
Sbjct 89988 TACCAGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTTTGGGCCTTTAGG-GTC 89930
Query 23226 GCACGTACCT--GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA 23283
|| |||| ||| | ||||||||| | ||||| || || ||||| | |||||
Sbjct 89929 TTGCG-ACCTTTGCCCATCTGCTCGTACTTCTCGTACAGGGCCTCGAATTCCTCGCCGTA 89871
Query 23284 ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTC 23343
|||||||| || || || | | | || ||||||||| |||| || || ||
Sbjct 89870 GCAGTCGGCGAGACCAGGGCACTCGTTGGGGCACATGAGAGTCCAGTCGCCGTTCTTCTC 89811
Query 23344 AACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCAC 23403
|| | |||| || ||||| || ||||| || ||| || || || || ||||| ||
Sbjct 89810 CACTCTCTTCATGAAGAGATCGGGGATCCAGAGGGCGAGAAATAGGTCACGAGCGCGGAC 89751
Query 23404 CTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGG 23463
|||||| || || |||||| || |||||| ||||| || || || || ||||| ||
Sbjct 89750 CTCCTCCTTCCCATGGTTCTTGCGCAGATCCAAGAAGTCAAATACATCAGCGTGCCAAGG 89691
Query 23464 CTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGC 23523
||||||||| | |||||| || || || | ||| || |||||||| |||||||| |||||
Sbjct 89690 CTCGAGGTAGATGGCAAAAGCACCGGGGCGCTTGTTTCCGCCCTGGTCGACGTAGCGGGC 89631
Query 23524 CGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGC 23583
||||||||| | || | ||||| || |||| ||||| || | |||| ||| ||
Sbjct 89630 AGTGTTGTTGAAGACACGGAGCATGGGAACGACGCCGTTAGAGGTGCCGTTGGTGCCAGC 89571
Query 23584 CACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTT 23643
| || || | || || | | ||| |||| || ||| ||||| || || ||
Sbjct 89570 AATGTAAGAGCCGGTAGCGCGGATGCGGTGGACGTTGAGACCAATGCCACCAGCCATCTT 89511
Query 23644 CGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGT 23703
|| ||||| || || || || ||||||||||| |||||||| |||||| || |
Sbjct 89510 GGAGATCATAGCACAGGTCTTGAGGGTGTCGTAGATACCCTCGATAGAGTCCTCCTTCAT 89451
Query 23704 CGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGG 23763
|||| | |||||| || |||| ||||| | ||| ||| |||| ||| ||||| ||
Sbjct 89450 ATCGACAAGGAAACAAGAGGACAGCTGCGCCTGGGGGGTACCGGCGTTGAAGAGTGTGGG 89391
Query 23764 GCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAAT 23823
|||||| || ||| | ||||||| || ||||| || ||||| || ||||
Sbjct 89390 AGAGGCGTGGGTGAAGAACTTGCTCGACATCAGGTTGTAGGTCTCGATAACGCGCTCAAC 89331
Query 23824 GTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGT 23883
|| || || || |||| || || ||||| ||||||| || ||||||||| | |
Sbjct 89330 GTTGTCGCCCCAGATTCCGACAGCAACACGCATGATCATGTGCTGGGGTCTCTCGGCAAT 89271
Query 23884 GACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943
||||| || || | || || || | | || || || || || || || | ||
Sbjct 89270 CTTGCCGTCAAGCTTCAGGAGGTAAGATCTCTCCAAGGTCTTGAAGCCGAAGTATTGGTA 89211
Query 23944 GTTAAAGTCACGATCGTGCACTATGGCCGA 23973
||| ||||| || |||| || ||||| ||
Sbjct 89210 GTTGAAGTCGCGGTCGTAGACGATGGCAGA 89181
>seq3878
Length=33396
Score = 122 bits (134), Expect = 8e-23
Identities = 176/246 (72%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| || || ||||| |||| || || ||||| || | || ||||| | ||
Sbjct 29362 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTTCT 29421
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| | ||||| | ||| |||||||| || | || || ||||||
Sbjct 29422 GACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 29481
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||||| || || |||||||| || || |||| ||| | || |||||||||| |||
Sbjct 29482 CAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACAAC 29541
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT-AG-AAGCGGTG 31430
|| || || || |||||||| || || || ||| | ||| | |||||| || ||||| ||
Sbjct 29542 ATCCAGAAGGAGTCGACTCTCCACCTTGTCCTTCGTCTGCGTGGCGGTCAGTAAGCGATG 29601
Query 31431 ACGTCG 31436
| |||
Sbjct 29602 GCTTCG 29607
Score = 102 bits (112), Expect = 7e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || || || || |||||||| | || |||||| | ||
Sbjct 29134 ATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCA 29193
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || ||||||||| ||| | || |||||||||
Sbjct 29194 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 29253
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|| || || || || || ||||| ||| | || || ||| || ||| || |||
Sbjct 29254 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 29313
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| || || ||||| ||||| || || || ||| | ||| | || ||||
Sbjct 29314 ATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGGTA 29362
Score = 93.3 bits (102), Expect = 4e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262
|||| |||||||| || ||||| || ||||| |||| || || | ||||||| |||
Sbjct 28916 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCG 28975
Query 31263 AAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAA 31322
| | ||||| | || ||||||||| ||| | || ||||||||||| || | |
Sbjct 28976 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGA 29035
Query 31323 TATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAG 31382
| || |||||||| ||| | || || ||| || ||| || ||||| || || |
Sbjct 29036 TCTTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGG 29095
Query 31383 AATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|||| ||||| || |||| ||| | || | || ||||
Sbjct 29096 AATCTACTCTCCACTTGGTGCTTCGTCTCCGTGGTGGTA 29134
>seq3337
Length=46210
Score = 114 bits (126), Expect = 1e-20
Identities = 256/381 (67%), Gaps = 10/381 (3%)
Strand=Plus/Minus
Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAG 57973
||||||||| || ||| | |||| ||||| | | | | || | |||||| || |
Sbjct 4594 CAAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCG 4535
Query 57974 GCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATT 58033
|| | || || || |||||||| || || |||||| || ||| || | || ||
Sbjct 4534 CCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTT 4475
Query 58034 TTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCG 58093
||| | ||||| || || || ||||| || ||||| || ||||||| | || || ||
Sbjct 4474 CTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCG 4415
Query 58094 CGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC 58153
||||||||||| || || || || || || || |||| || ||| |||| ||||
Sbjct 4414 TGACGAGGGTCTGCACACCGACTTCGCCTGTCTCTTGTATTCCCAC---CTCAA-GAACC 4359
Query 58154 GACGCGGGATCGC-----ATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208
| | | | | || ||| |||||| || ||| || ||| ||| || | |||
Sbjct 4358 GCCCCAGCA-AGCAGGTTATCGAGGACATCATTGTCGATGCTGTCAAGATTGAGCAGGAG 4300
Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268
|| | || || || || || ||| ||||||| |||||| | ||||| ||
Sbjct 4299 TTCCTGACGGAGGCTCTTCCTTGCGCCCTGCTCGGCATGAACTCCAACCTGATGAAGCAG 4240
Query 58269 TACATTGAGTTTGTTGCCGAC 58289
||||||||||| |||||||||
Sbjct 4239 TACATTGAGTTCGTTGCCGAC 4219
>seq1916
Length=1946
Score = 111 bits (122), Expect = 1e-19
Identities = 171/244 (70%), Gaps = 4/244 (2%)
Strand=Plus/Minus
Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247
||| |||||| || ||||| ||||| || || ||||| || |||||| | || || ||
Sbjct 1367 CAATCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 1308
Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307
||||||||| |||| | ||||| | || ||||||||| ||| | || ||||
Sbjct 1307 CGTCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 1248
Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367
|||||||||| || || ||||| || || ||| | || ||| || || ||| |
Sbjct 1247 ACCAGCAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACT 1188
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423
| ||||| || || || || || || || ||||| ||| | ||| | || ||| |||
Sbjct 1187 ACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGTGGTAAGA 1128
Query 31424 AGCG 31427
||||
Sbjct 1127 AGCG 1124
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445742116875360
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