Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq245 165 1e-35 seq3337 147 3e-30 seq855 93.3 6e-14 >seq245 Length=98725 Score = 165 bits (182), Expect = 1e-35 Identities = 380/567 (67%), Gaps = 4/567 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||||| | | | ||| | || || |||||| | | | ||| || || | || Sbjct 89577 ACCAACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACAACACTGCC-CG 89635 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| |||||||| || || || || || ||| | ||| ||||| | || ||||| Sbjct 89636 CTACGTCGACCAGGGCGGAAACAAGCGCCCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 89695 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || |||||||| | || ||||||| ||| ||| || |||| || Sbjct 89696 GCACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGGAGGAGGTCCG 89755 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 || | ||| | ||| || |||||| | || ||| | ||||||||| | || | | Sbjct 89756 CGCTCGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAA 89815 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| |||||| || ||||||||| || || || ||||| |||| |||| || Sbjct 89816 GAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACGG 89875 Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAG 97164 ||| || || |||||| |||| | |||||||| |||| | || |||| Sbjct 89876 CGAGGAATTCGAGGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAAGAC-CC 89934 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | | | || ||| | |||||| | |||||| |||||||| | || | Sbjct 89935 TAAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTAACCCCT 89994 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 || |||||||||||| | | || ||||| |||||||| || |||| |||||| Sbjct 89995 TTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCC 90054 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 |||||| || ||||| || || | |||||| | |||| || ||| ||||| | Sbjct 90055 GTAACTCCAACCTATGCACTGAGATCATTGAGTACTGCGCTCCTGATGAGGTCGCAGTGT 90114 Query 97345 GCGTTCTGGCATCGGTCAATCTGCCCA 97371 || ||||| ||| | ||||||| Sbjct 90115 GCAACCTGGCCTCGCTTGCGCTGCCCA 90141 >seq3337 Length=46210 Score = 147 bits (162), Expect = 3e-30 Identities = 316/465 (68%), Gaps = 27/465 (6%) Strand=Plus/Minus Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459 || || ||||| || | |||| | | ||||| || || || ||||| |||||||||||| Sbjct 4560 GATGAGAAGTCCTCCTTCGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTC 4501 Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519 ||| ||| || || ||||||| |||||||||||||| || |||||||| || ||| Sbjct 4500 TTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTG 4441 Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579 || | |||||| | || ||||| |||||||| || ||| ||||| ||| ||| Sbjct 4440 ACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGTCTC 4381 Query 125580 CTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAA 125635 ||| ||| || || | || ||| | |||| | | ||| || || Sbjct 4380 TTGTATTCCCACCTCAAGAACCGCCCCAGCAAGCAGGT-TATCGAGGA---------CAT 4331 Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695 |||||| |||||| || | ||| || || ||||| || || || | || || | Sbjct 4330 CATTGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTTCCTTGCGC 4274 Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755 | || | |||||||||| ||| || ||| ||||||| ||||| || || || ||||| Sbjct 4273 CCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCT 4214 Query 125756 ACTGTACGAGTT--GATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810 || ||| | ||||| || ||| | ||||| | || ||||| || ||| Sbjct 4213 CCT-----TGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTCGACTTC 4159 Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| | ||| || || | || ||||||||||| ||||||||| Sbjct 4158 ATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 4114 Score = 89.7 bits (98), Expect = 8e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | || ||| | || || Sbjct 5004 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACTTG 4945 Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137 |||||||| ||| |||| ||| | | | | | || || |||| | || || || Sbjct 4944 TCCAAGGATCTGCACGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 4886 Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA 125185 ||||||| | ||||||||||||| ||||| || |||||||| || || Sbjct 4885 GCACATTCTCGCCTTCTTTGCCGCTTCCGACGGCATCGTCAATGAGAA 4838 >seq855 Length=37984 Score = 93.3 bits (102), Expect = 6e-14 Identities = 172/247 (70%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103 ||||| || | || || ||| ||||| || || ||||| || |||||||| ||| | | Sbjct 2603 TCGGCCTCTCGCACCGAGAAGTCGGCGACCTCGGCCCAGTCTATGGATTCCAATGGCGAC 2544 Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-A 70162 ||| ||| || |||| || ||| | |||| ||||| ||||||||||||| || || Sbjct 2543 ACTTTGGCGCCGAGTACGTCGACGCCAAGACGGACTACACGGGTCAGGGTGTCGACCAGC 2484 Query 70163 TTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222 |||| || | || ||| |||||||| || || ||| | | ||| | | || Sbjct 2483 TTGCCGA-GGTTATCCACAAGCTCAAGACGAACCCTTACGATCGCCGCATCCTCCTCAGC 2425 Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCA 70281 | ||||| || || ||| | | | ||||| || ||||| || ||| ||||| || || Sbjct 2424 GCGTGGAACCCGGCGGATCTAAAGAAGATGGCCCTGCCACCATGCCACATGTTT-GCGCA 2366 Query 70282 GTTTTAC 70288 ||| ||| Sbjct 2365 GTTCTAC 2359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741018830800080