Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq245 165 1e-35
seq3337 147 3e-30
seq855 93.3 6e-14
>seq245
Length=98725
Score = 165 bits (182), Expect = 1e-35
Identities = 380/567 (67%), Gaps = 4/567 (1%)
Strand=Plus/Plus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865
|| ||||||| | | | ||| | || || |||||| | | | ||| || || | ||
Sbjct 89577 ACCAACGGCACCTCTAACGGCGTCGTTCCCATGCTCCGTGTCTTCAACAACACTGCC-CG 89635
Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925
||||| |||||||| || || || || || ||| | ||| ||||| | || |||||
Sbjct 89636 CTACGTCGACCAGGGCGGAAACAAGCGCCCCGGTGCTTTTGCCATCTACCTCGAGCCTTG 89695
Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985
|||||| || || |||||||| | || ||||||| ||| ||| || |||| ||
Sbjct 89696 GCACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGAACCATGGGAAGGAGGAGGTCCG 89755
Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045
|| | ||| | ||| || |||||| | || ||| | ||||||||| | || | |
Sbjct 89756 CGCTCGTGACCTATTTCTCGCCCTCTGGATCCCCGATCTCTTCATGAAGAGAGTGGAGAA 89815
Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105
||| |||||| || ||||||||| || || || ||||| |||| |||| ||
Sbjct 89816 GAACGGCGACTGGACTCTCATGTGCCCCAACGAGTGCCCTGGTCTCGCCGACTGCTACGG 89875
Query 97106 CGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGA-TACGTGAGACGAG 97164
||| || || |||||| |||| | |||||||| |||| | || ||||
Sbjct 89876 CGAGGAATTCGAGGCCCTGTACGAGAAGTACGAGCAGATGGGCAAAGGTCGCAAGAC-CC 89934
Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224
| | || | | | || ||| | |||||| | |||||| |||||||| | || |
Sbjct 89935 TAAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACTGGTAACCCCT 89994
Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284
|| |||||||||||| | | || ||||| |||||||| || |||| ||||||
Sbjct 89995 TTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAACCAGAAGAACCTGGGTACCATCC 90054
Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344
|||||| || ||||| || || | |||||| | |||| || ||| ||||| |
Sbjct 90055 GTAACTCCAACCTATGCACTGAGATCATTGAGTACTGCGCTCCTGATGAGGTCGCAGTGT 90114
Query 97345 GCGTTCTGGCATCGGTCAATCTGCCCA 97371
|| ||||| ||| | |||||||
Sbjct 90115 GCAACCTGGCCTCGCTTGCGCTGCCCA 90141
>seq3337
Length=46210
Score = 147 bits (162), Expect = 3e-30
Identities = 316/465 (68%), Gaps = 27/465 (6%)
Strand=Plus/Minus
Query 125400 GACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTC 125459
|| || ||||| || | |||| | | ||||| || || || ||||| ||||||||||||
Sbjct 4560 GATGAGAAGTCCTCCTTCGCCCAGCGCCTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTC 4501
Query 125460 TTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTG 125519
||| ||| || || ||||||| |||||||||||||| || |||||||| || |||
Sbjct 4500 TTTAGTGGTGCCTTCGCATCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTG 4441
Query 125520 ACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTA 125579
|| | |||||| | || ||||| |||||||| || ||| ||||| ||| |||
Sbjct 4440 ACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTGCACACCGACTTCGCCTGTCTC 4381
Query 125580 CTGT-TTCGCAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAA 125635
||| ||| || || | || ||| | |||| | | ||| || ||
Sbjct 4380 TTGTATTCCCACCTCAAGAACCGCCCCAGCAAGCAGGT-TATCGAGGA---------CAT 4331
Query 125636 CATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAG 125695
|||||| |||||| || | ||| || || ||||| || || || | || || |
Sbjct 4330 CATTGT---CGATGCTGTCAAGATTGAGCAGGAGTTCCTGACGGAGGCTCTTCCTTGCGC 4274
Query 125696 CATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCT 125755
| || | |||||||||| ||| || ||| ||||||| ||||| || || || |||||
Sbjct 4273 CCTGCTCGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCT 4214
Query 125756 ACTGTACGAGTT--GATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810
|| ||| | ||||| || ||| | ||||| | || ||||| || |||
Sbjct 4213 CCT-----TGTTGCGCTTGGCAACGAAAAGGTCTACAAGTCTTCCAACCCCTTCGACTTC 4159
Query 125811 ATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
||| | ||| || || | || ||||||||||| |||||||||
Sbjct 4158 ATGGAGAACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAG 4114
Score = 89.7 bits (98), Expect = 8e-13
Identities = 122/168 (73%), Gaps = 2/168 (1%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||||| ||||||| || ||||| | || ||| | || ||
Sbjct 5004 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCAGAGGAGATTGACTTG 4945
Query 125079 TCCAAGGACCTGTACGATTGGGAGA-CTCGTTTGACTGAAACTGAGCGAGAGTTTATATC 125137
|||||||| ||| |||| ||| | | | | | || || |||| | || || ||
Sbjct 4944 TCCAAGGATCTGCACGACTGGAACAACAAGATCAAC-GAGGATGAGAAGTACTTCATCTC 4886
Query 125138 GCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAA 125185
||||||| | ||||||||||||| ||||| || |||||||| || ||
Sbjct 4885 GCACATTCTCGCCTTCTTTGCCGCTTCCGACGGCATCGTCAATGAGAA 4838
>seq855
Length=37984
Score = 93.3 bits (102), Expect = 6e-14
Identities = 172/247 (70%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 70044 TCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGC 70103
||||| || | || || ||| ||||| || || ||||| || |||||||| ||| | |
Sbjct 2603 TCGGCCTCTCGCACCGAGAAGTCGGCGACCTCGGCCCAGTCTATGGATTCCAATGGCGAC 2544
Query 70104 ACTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCA-A 70162
||| ||| || |||| || ||| | |||| ||||| ||||||||||||| || ||
Sbjct 2543 ACTTTGGCGCCGAGTACGTCGACGCCAAGACGGACTACACGGGTCAGGGTGTCGACCAGC 2484
Query 70163 TTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGC 70222
|||| || | || ||| |||||||| || || ||| | | ||| | | ||
Sbjct 2483 TTGCCGA-GGTTATCCACAAGCTCAAGACGAACCCTTACGATCGCCGCATCCTCCTCAGC 2425
Query 70223 TCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCA 70281
| ||||| || || ||| | | | ||||| || ||||| || ||| ||||| || ||
Sbjct 2424 GCGTGGAACCCGGCGGATCTAAAGAAGATGGCCCTGCCACCATGCCACATGTTT-GCGCA 2366
Query 70282 GTTTTAC 70288
||| |||
Sbjct 2365 GTTCTAC 2359
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741018830800080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |