Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq274 113 4e-20 >seq274 Length=111205 Score = 113 bits (124), Expect = 4e-20 Identities = 179/254 (70%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||| ||||| ||||| ||||| | | | || || || || ||||| Sbjct 87877 ACGCCCGTGCTGCCGAAGCCGCCGGCGCCGCGCACGCTCTCCTCGAGCTCGGCGACCTCG 87936 Query 5561 TCCACATCGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | | |||||| | || |||||| || ||||| || | ||||||||| Sbjct 87937 ACGATCTCGGGGGT-GAAGATGCGCTCCACGACGAGCTGGGCGACGCGGTCGCCCTCGGC 87995 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 |||||||| ||| || | || |||||| || | || || | |||||||||||| Sbjct 87996 GACCTCGAAGTCGGCGTCGGCGTGGTTGAAGAGGAGGACCTTGACCTCGCCGCGGTAGTC 88055 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 |||||| || ||||| ||||| ||||||||||| |||| | || |||||||||||||| Sbjct 88056 GGCGTCGATGACGCCGGCGCCAGTGTCGATGAAGTTCTTGGCAGCGAGGCCGGAGCGGGG 88115 Query 5740 AGCCACGCGGCCGT 5753 || | |||||||| Sbjct 88116 GGCGATGCGGCCGT 88129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430031558466896