Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3878 122 8e-23 >seq3878 Length=33396 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||| | || || | || | ||| | |||||||||||| || | ||| | Sbjct 29368 TTTGCATACCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGT 29309 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||| || ||| | |||||| ||||| || ||| ||||||| | | |||||| | Sbjct 29308 AGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGT 29249 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | ||||| || || || ||||| | ||| || | ||||||| | | | ||||| | Sbjct 29248 CGGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATG 29189 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| |||||| || ||||||||||| || || || ||||||||||| Sbjct 29188 ATTCAACCTCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | |||||||||||| || | ||| || ||| || ||| | |||||| Sbjct 29115 CACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTC 29056 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || ||||||| || | |||||| || ||||| || || || ||||| | Sbjct 29055 GAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 28996 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || | |||||| | ||| ||||| | | || || || | |||||||| || Sbjct 28995 GATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTT 28936 Query 94978 TCCAGTAAGAGTTTTCAC 94995 ||||| ||||| || || Sbjct 28935 GCCAGTGAGAGTCTTGAC 28918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448266779336880