Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3878 122 8e-23
>seq3878
Length=33396
Score = 122 bits (134), Expect = 8e-23
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || ||||| | || || | || | ||| | |||||||||||| || | ||| |
Sbjct 29368 TTTGCATACCTCCGCGCAGGCGAAGGACGAGGTGGAGAGTAGATTCCTTCTGGATGTTGT 29309
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| ||| || ||| | |||||| ||||| || ||| ||||||| | | |||||| |
Sbjct 29308 AGTCGGACAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGT 29249
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
| ||||| || || || ||||| | ||| || | ||||||| | | | ||||| |
Sbjct 29248 CGGGAGGGATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCAATGGTGTCTGATG 29189
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || |||| |||||| || ||||||||||| || || || |||||||||||
Sbjct 29188 ATTCAACCTCAAGCGTGATCGTCTTTCCAGTAAGCGTCTTGACGAAGATCTGCAT 29134
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| | |||||||||||| || | ||| || ||| || ||| | ||||||
Sbjct 29115 CACCAAGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGGCCATCCTC 29056
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| || || ||||||| || | |||||| || ||||| || || || ||||| |
Sbjct 29055 GAGCTGCTTGCCAGCAAAGATCAAGCGTTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 28996
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || | |||||| | ||| ||||| | | || || || | |||||||| ||
Sbjct 28995 GATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCTACCTCGAGAGTGATGGTCTT 28936
Query 94978 TCCAGTAAGAGTTTTCAC 94995
||||| ||||| || ||
Sbjct 28935 GCCAGTGAGAGTCTTGAC 28918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448266779336880
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |