Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3043 104 4e-18 seq1864 89.7 8e-14 >seq3043 Length=177082 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 45325 GCGAAGCGCCACCGCAAGATTT-TGCGTGACAACATCCAGGGTATCACCAAGCCCGCTAT 45383 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||||||||| ||||||||||| || ||||||||| |||||| Sbjct 45384 CCGTCGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 45424 Score = 89.7 bits (98), Expect = 8e-14 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | ||| ||||||| || || |||| ||| | Sbjct 45482 TGATCTACGAGGAGACCCGCGGTGTCCTCAAGTCCTTCCTCGAGGGTGTCATCCGTGACG 45541 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| || |||||||| || || |||||||||||||| |||| ||||||| | Sbjct 45542 CCGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTCACCTCTCTGGACGTCGTCTACG 45601 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || |||||||| | | || ||||| || ||||| Sbjct 45602 CGCTGAAGCGCCAAGGCCGCACCCTCTACGGTTTCGGTGGTTAA 45645 >seq1864 Length=161741 Score = 89.7 bits (98), Expect = 8e-14 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| | | || || ||||| || || ||||| ||||| ||||| Sbjct 122155 GCCAAGCGCCACCGCAAGATTT-TGCGCGACAACATTCAGGGTATCACAAAGCCTGCTAT 122213 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 122214 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 122254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79071215450094