Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq245 370 3e-97 seq3337 93.3 1e-13 >seq245 Length=98725 Score = 370 bits (410), Expect = 3e-97 Identities = 1067/1628 (66%), Gaps = 30/1628 (2%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||| | || ||| | | ||| || || || | | | ||| |||| ||| Sbjct 89376 TTCACCCACGCCTCTCCCACACTCTTCAACGCCGGTACCCCCCAGGCGCAGCTGTCCTCT 89435 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 || || ||| | | |||||||| || || ||||||||||||| ||||| || |||| Sbjct 89436 TGTTTCCTTGTCGATATGAAGGAGGACTCTATCGAGGGTATCTACGACACCCTCAAGACC 89495 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC 363725 |||||| | || ||||||| || || || |||||| | | || ||||| | || || Sbjct 89496 TGTGCTATGATCTCCAAGATGGCTGGTGGCATTGGTCTCAACG-TCCACCGCATCCGCGC 89554 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 || | | ||||||| ||||| || ||| || || | ||||||||||| | Sbjct 89555 TACCGG-CTCTTACATTGCTGGCACCAACGGCACCTCTAACGGCGTCGTTCCCATGCTCC 89613 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||| || |||| ||||| | |||||||||||||| ||| |||||| || || | Sbjct 89614 GTGTCTTCAACAACACTGCCCGCTACGTCGACCAGGGCGGAAACAAGCGCCCCGGTGCTT 89673 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAA 363904 |||| || || ||||||||| || || ||| | ||||| || | || || || || | Sbjct 89674 TTGCCATCTACCTCGAGCCTTGGCACGCTGATGTATTTGACTTCTTGGATCTGCGCAAGA 89733 Query 363905 ACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || || || ||||| | || || ||||| || || || || ||| | | || | Sbjct 89734 ACCATGGGAAGGAGGAGGTCCGCGCTCGTGACCTATTTCTCGCCCTCTGGATCCCCGATC 89793 Query 363965 ATTTTATGAAGCGCGTGGAGGCAGGTAAG--AATTGGTCACTCTTTTGCCCACACGAATG 364022 || |||||| | |||||| | | | | | ||| | ||| | ||||| |||| || Sbjct 89794 TCTTCATGAAGAGAGTGGAG--AAGAACGGCGACTGGACTCTCATGTGCCCCAACGAGTG 89851 Query 364023 TCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATC 364082 || ||||| |||| | || || || | | || || ||||| ||||| || Sbjct 89852 CCCTGGTCTCGCCGACTGCTACGGCGAGGAATTCGAGGCCCTGTACGAGAAGTACGAGCA 89911 Query 364083 GGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 | ||| || | ||| ||||| | || || ||||| |||| ||||||| | || | Sbjct 89912 GATGGGCAAAGGTCGCAAGACCCTAAAGGCCCAAAAGCTCTGGTATGCCATCCTCGAGGC 89971 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 || | ||||| || | |||| |||| | ||||| ||| | |||||||||| ||| Sbjct 89972 TCAAACCGAGACTGGTAACCCCTTTATGCTCTACAAGGATGCTGCCAACCGCAAGAGCAA 90031 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 |||| || |||| ||||| || | | ||||||||| || ||||| ||||| ||| Sbjct 90032 CCAGAAGAACCTGGGTACCATCCGTAACTCCAACCTATGCACTGAGATCATTGAGTACTG 90091 Query 364263 CGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT--- 364319 |||||| || ||| || || || ||||| || ||| | ||||| || | || || Sbjct 90092 CGCTCCTGATGAGGTCGCAGTGTGCAACCTGGCCTCGCTTGCGCTGCCCACCTTCGTTGA 90151 Query 364320 ---AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTA--TCATGCTACT 364374 || || ||| || ||| |||| | ||| | || || ||| | || | | | Sbjct 90152 CTACAACGAGGGTGTTTACGACTTCCAGAAGCTTCACGAGGTCACCCAGGTCGTCGT--T 90209 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CG----AGC 364429 |||| ||| ||| | ||||| || | || || | | || || || ||| Sbjct 90210 CGCAACCTCAACAGAATCATCGATGTCAACCACTACCCGGTCCAGGAGGCTCGCAACAGC 90269 Query 364430 GTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTA 364489 || ||||| || ||||| |||||||| ||||| ||||| || || || | || Sbjct 90270 -----AACATGCGCCACCGCCCCATTGGTCTCGGTGTTCAGGGTCTTGCCGATGCCTTCT 90324 Query 364490 TGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTG 364549 || ||| ||| | || || || || || ||||||| || || ||| ||||||| | Sbjct 90325 TGGCCCTCCGCATGCCCTTCGAGTCCCCCGAAGCTCGTGACCTCAACAAGAAGATCTTCG 90384 Query 364550 AAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGT 364609 | ||||| || || || | || ||| | | ||||| || |||| | Sbjct 90385 AGACAATCTACCACGCTGCCCTTACCATGTCGGTTCAGTTGGCCAAGGAGGAGGGCCCCT 90444 Query 364610 ACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 | || |||||||| |||||| |||| ||||| | |||||| || | ||||||| Sbjct 90445 ATCAGACGTATGAGGGTTCCCCTGTTTCTCAGGGCATCCTCCAGTACGACATGTGGAATG 90504 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCT-ACGTTCCAACGTTAAGAAGCATGGT 364728 ||| || || | | ||| |||||||| | || | | | | | ||| |||| ||| Sbjct 90505 TCAAACCCTCGGATCTCTGGGACTGGGATTCTCTGAAGGAGC-AGATCAAGCAGCACGGT 90563 Query 364729 ACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGA 364788 |||||||| || | ||||||||||| || || || | |||||| | || Sbjct 90564 GTCCGCAACTCTCTGCTCGTCGCGCCCATGCCGACTGCCAGCACCTCTCAGATCTTGGGT 90623 Query 364789 AACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGA 364848 |||||||||||||||||||| | || ||| |||| || || || ||| | || Sbjct 90624 AACAACGAGTGCTTCGAACCTTACACCTCCAACATTTACCAGCGTCGTGTCCTTGCTGGC 90683 Query 364849 GAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGT 364908 || || | || || || | || | ||||| || |||| || ||||| | Sbjct 90684 GAGTTCCAAGTCGTCAACCCTTGGCTCTTGAAGGACCTCGTCGACATGGGCTTGTGGTCT 90743 Query 364909 GACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTT 364968 ||| ||||||||| ||||| |||| || |||||| | |||||||| || || Sbjct 90744 GACGCTATGAAGAACCGCATCATTGCCGAGAACGGTTCTATTCAGAACATCCCCAACATT 90803 Query 364969 CCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATT 365028 || || | ||| | | ||||| || || |||||||| ||| ||| || | | Sbjct 90804 CCTACCGAGGTCAAGGCGCTGTACAAGACTGTTTGGGAAATCTCCCAGCGCACCGTTGTG 90863 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||| ||||| || || || || ||| ||| |||||| | ||| | |||| Sbjct 90864 CAAATGGCTGCCGACCGTGGCGCCTTCATCGACCAGTCGCAGTCGCTCAACATCCACATG 90923 Query 365089 ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTT 365148 | | || || | |||| | || |||||| ||| || ||||| ||| || Sbjct 90924 AAAGACCCGACTATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGACTG 90983 Query 365149 AAGACAGG 365156 ||||| || Sbjct 90984 AAGACGGG 90991 >seq3337 Length=46210 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGA-ACGT--TCATTCGCGGAACGT 22494 || ||||| || ||||| || || ||||| | | |||| | || || ||||| | || Sbjct 4593 AAGAAGGCCGACTGGGCCCTCAAGTGGATTAGCGATGAGAAGTCCTCCTTCGCCCAGCGC 4534 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 || |||| ||||||| || || ||||| |||||| ||| || || | ||||| Sbjct 4533 CTGGTTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTAGTGGTGCCTTCGCATCCATCTTC 4474 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | ||||||||||| || || || || ||| | || || Sbjct 4473 TGGCTCAAGAAGCGTGGTCTCATGCCGGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 4414 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGT 22644 || |||||||| || ||||| || || ||| Sbjct 4413 GACGAGGGTCTGCACACCGACTTCGCCTGT 4384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303280824807956