Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2847 136 3e-27
seq4036 116 2e-21
seq151 116 2e-21
seq1538 89.7 3e-13
>seq2847
Length=8172
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1395 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1454
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1455 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1489
>seq4036
Length=33180
Score = 116 bits (128), Expect = 2e-21
Identities = 202/294 (69%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253
|||||| ||||| |||||||| ||| | ||| | ||||| ||||||| ||||| ||
Sbjct 19864 GGACGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 19923
Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313
|| || || ||||| | |||||| || |||||| || | || | || || |
Sbjct 19924 TGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTCGCTCAGTCTCTTGCCCGTCCCGG 19983
Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| ||| | | || || ||||| | ||| || || || ||||| | | || | |
Sbjct 19984 CGCCTTCGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 20043
Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433
|||| |||| ||| | ||||| || || ||| | ||||||||||||||| || ||
Sbjct 20044 CGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGACCACCTCGA 20103
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
|||||| || |||||| || || || | | ||| | ||||| ||||||||
Sbjct 20104 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 20157
>seq151
Length=7550
Score = 116 bits (128), Expect = 2e-21
Identities = 87/102 (85%), Gaps = 5/102 (5%)
Strand=Plus/Minus
Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949
|| || |||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 6171 TTCTACTAAGCCTGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGATAGTGGGA 6112
Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||||||||| || ||| | || ||||||||||||||||
Sbjct 6111 ATCTCGTTAATCTATTTATGTGTGTTACTAATTAGATGACGA 6070
>seq1538
Length=17301
Score = 89.7 bits (98), Expect = 3e-13
Identities = 78/97 (80%), Gaps = 5/97 (5%)
Strand=Plus/Plus
Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949
|| || |||||| ||||||||||| |||||| ||||||||||||||||| | |
Sbjct 11114 TTCTACTAAGCCTATTCCCTTGGCTATGGTTTTACTAGATAGTAGATAGGGATAGTAGGA 11173
Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGAT 25986
|||||||||||| || || ||||| |||||||||||
Sbjct 11174 ATCTCGTTAATCTATTTATACGCGTTACTAATTAGAT 11210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334929409907498
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |