Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2847 136 3e-27 seq4036 116 2e-21 seq151 116 2e-21 seq1538 89.7 3e-13 >seq2847 Length=8172 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1395 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1454 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1455 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1489 >seq4036 Length=33180 Score = 116 bits (128), Expect = 2e-21 Identities = 202/294 (69%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 6194 GGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAA 6253 |||||| ||||| |||||||| ||| | ||| | ||||| ||||||| ||||| || Sbjct 19864 GGACGCTTTCTATCGCTACAAGATGGAGAAGATCGTCACCAAGATCGAGGGCAAGGGCAA 19923 Query 6254 CGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGC 6313 || || || ||||| | |||||| || |||||| || | || | || || | Sbjct 19924 TGGCATCAAGACCGTTGTCGTCAACCTGAGCAGCGTCGCTCAGTCTCTTGCCCGTCCCGG 19983 Query 6314 CACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | ||| | | || || ||||| | ||| || || || ||||| | | || | | Sbjct 19984 CGCCTTCGTCATCAAGTACTTCGGCTTCGAGCTCGGTGCCCAGACCAACGTCGACCCCGC 20043 Query 6374 AAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGA 6433 |||| |||| ||| | ||||| || || ||| | ||||||||||||||| || || Sbjct 20044 CGACGACCGCTGGATCATCAACGGCTCCCACAACGCCGCCAAGCTGCAGGACCACCTCGA 20103 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 |||||| || |||||| || || || | | ||| | ||||| |||||||| Sbjct 20104 CGGCTTCATCAACAAGTTCGTCCTCTGCAAGAAGTGCAAGAACCCCGAGACCGA 20157 >seq151 Length=7550 Score = 116 bits (128), Expect = 2e-21 Identities = 87/102 (85%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 || || |||||| |||||||||||||||||||||||||||||||||||||| || | Sbjct 6171 TTCTACTAAGCCTGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGATAGTGGGA 6112 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||| || ||| | || |||||||||||||||| Sbjct 6111 ATCTCGTTAATCTATTTATGTGTGTTACTAATTAGATGACGA 6070 >seq1538 Length=17301 Score = 89.7 bits (98), Expect = 3e-13 Identities = 78/97 (80%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 || || |||||| ||||||||||| |||||| ||||||||||||||||| | | Sbjct 11114 TTCTACTAAGCCTATTCCCTTGGCTATGGTTTTACTAGATAGTAGATAGGGATAGTAGGA 11173 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||||||||||| || || ||||| ||||||||||| Sbjct 11174 ATCTCGTTAATCTATTTATACGCGTTACTAATTAGAT 11210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334929409907498