Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3878 125 6e-24 seq1916 114 1e-20 >seq3878 Length=33396 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||||||||| || || || | |||||| | ||| | | || Sbjct 28646 ACCGGCAAGACCATCACTCTTGAGGTCGAGTCCTCTGATACCATCGACAACGTGAAGTCC 28705 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| || |||||||| || |||||||| || || ||||| Sbjct 28706 AAGATCCAGGACAAGGAGGGTATCCCTCCCGATCAGCAGCGTCTTATCTTCGCTGGCAAG 28765 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||||| ||||||| |||||||| || || || ||||| | || Sbjct 28766 CAGCTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 28825 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || | || || ||| Sbjct 28826 TTGGTTCTCCGCCTCCGTGGTGGT 28849 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| |||| ||||| || ||| | | Sbjct 29134 ATGCAGATCTTCGTCAAGACGCTTACTGGAAAGACGATCACGCTTGAGGTTGAATCATCA 29193 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| || || ||||| || Sbjct 29194 GACACCATTGACAACGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 29253 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||||||||| ||| | |||||| ||| || | ||||| |||||| Sbjct 29254 CAACGCCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAAC 29313 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || | || | || ||||||||||| Sbjct 29314 ATCCAGAAGGAATCTACTCTCCACCTCGTCCTTCGCCTGCGCGGAGGT 29361 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||| | || || || || ||||||| || || || || |||| ||| | ||| Sbjct 28918 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTAGAGTCCTCCGACACCATCGAC 28977 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || |||| || || || ||||||||||| || || ||||| || ||||| | || Sbjct 28978 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAACGCTTGATC 29037 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| ||||| ||| | |||||| ||| || | ||||| |||||||| || || ||| Sbjct 29038 TTTGCTGGCAAGCAGCTCGAGGATGGCCGTACTCTGTCCGACTACAACATCCAGAAGGAA 29097 Query 22411 TCCAC 22415 || || Sbjct 29098 TCTAC 29102 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| || ||| | || | || || || | | Sbjct 29362 ATGCAAATCTTTGTCAAGACCTTGACCGGAAAGACGATTACGTTGGAGGTTGAGTCTTCT 29421 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| ||||| ||||||||||||||||| || || || || Sbjct 29422 GACACTATCGACAACGTCAAGTCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 29481 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || || | ||||| |||||| | |||||||||| Sbjct 29482 CAGCGCCTGATTTTCGCTGGAAAGCAACTGGAGGACGGTCGCACCCTGAGCGATTACAAC 29541 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 29542 ATCCAGAAGGAGTCGAC 29558 >seq1916 Length=1946 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 1362 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 1303 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| || || ||||| || Sbjct 1302 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 1243 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || ||||| || ||| | ||||| ||||||| | ||||| |||||| Sbjct 1242 CAGCGCCTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 1183 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || | || | || ||||||| ||| Sbjct 1182 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGCCTGCGCGGTGGT 1135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419705706934270