Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01- 04] 4,358 sequences; 48,186,431 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3337 116 8e-21 seq1679 98.7 2e-15 seq2522 96.9 7e-15 seq1992 87.8 4e-12 seq3441 86.0 1e-11 >seq3337 Length=46210 Score = 116 bits (128), Expect = 8e-21 Identities = 270/405 (67%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||| || || | ||||| |||||||| || | |||||| Sbjct 4079 TTCATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 4138 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 |||| ||||| ||||||||||||||||||||| | | ||||| ||| | | Sbjct 4139 CCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTG 4198 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 ||||| || || | || ||||| || || ||||| | ||||| |||||| | ||| Sbjct 4199 CCAAGCGCAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAG 4258 Query 251704 TTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763 |||||||| | || ||||||| ||||| | ||| |||| || | || Sbjct 4259 TTCATGCCGAGCAGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACA 4318 Query 251764 GCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGA 251819 || || | | || ||| | ||||| | | | | | ||||| || | || Sbjct 4319 GCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGGGA 4374 Query 251820 GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879 |||| ||| | | || | ||||||||||||||| ||| ||||| ||||||||| Sbjct 4375 ATACAAGAGACAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 4434 Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924 | ||| || ||||| | ||||| ||| ||||||||||||| Sbjct 4435 GAAGGTCAGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 4479 >seq1679 Length=87701 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| ||||| ||||||||||| |||| | |||| ||||| || | Sbjct 81185 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAATTGGCTTTGGCTCGTGCCATGCTCAAG 81244 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||| || || ||||||||||| || || |||||| ||||| ||||| | ||| Sbjct 81245 GGCGCCGACGTTCTGCTGCTTGATGAACCTACTAACCACCTGGACGTTGCCAACATTGCC 81304 Query 279816 TGGCTAGTGTCCTACCTAA----CCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| | | ||||||| | ||| | || | || | | | || || || || Sbjct 81305 TGGCTCGAGACCTACCTCAAGACCCACCCCGA----TATTACCAGCTTAATCGTTTCCCA 81360 Query 279872 CGACTCTGGCTTCCTAGA 279889 ||||||||| ||||| || Sbjct 81361 CGACTCTGGTTTCCTCGA 81378 >seq2522 Length=51109 Score = 96.9 bits (106), Expect = 7e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 |||||||| || || |||| ||||| || || || |||| ||||||||||| ||| Sbjct 15383 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTCAAC 15324 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| ||||||||||| | || || ||||| ||| ||||| || | Sbjct 15323 CAGACTCACCTTCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGCCCCAACGGTTCC 15264 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 15263 GGCAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 15205 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 || ||||| | ||| || | || ||||||||| | ||||| Sbjct 15204 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 15163 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/120 (78%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762 ||||| ||||| |||||||| || || || ||| ||||| | ||| | | || || Sbjct 13979 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 13920 Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 ||| ||||| | ||||||| ||||||| ||||||||||| |||||||| || ||||| || Sbjct 13919 TCT-TGGCAGCGCCCTCACTTGATCGTACTCGACGAGCCCACCAACTACCTCGACCGTGA 13861 >seq1992 Length=43275 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| | Sbjct 14030 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 13971 Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588 ||||| |||||| || || ||||| Sbjct 13970 CCCACGTCGGGCTCAATTC-CCGTC 13947 >seq3441 Length=28323 Score = 86.0 bits (94), Expect = 1e-11 Identities = 197/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||| || ||||||||||||| || ||||| | |||| ||| || || || Sbjct 18666 GACTTCGTCAACAAGGAGCTCATCCTCTTCTCCATGGCTGATAACATGCGATCCATCCCG 18607 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||| || ||||| || ||||| ||||| ||| | ||| |||| |||||| || Sbjct 18606 TCCGTCGTCGATGGGCTGAAGCCCGGCCAGCGCAAGGTTATCTATGCCTGCTTCAAGAGG 18547 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 |||||||| | || ||||| | | | || | ||||| | ||||| | | Sbjct 18546 AACCTGGTCAAGGATCAGAAGGTTGTTGAATTAGCCGGTTACATTTCCGAGCAGACGTCC 18487 Query 218698 TACCATCACGGTGAGCAGAGT--CTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 ||||| ||||| || || | || ||| |||| | ||| | || ||| ||| || Sbjct 18486 TACCACCACGGCGA--AGTCTCCCTTCAGCAGACCATCATTGGCCTTGCCCAGAACTTTG 18429 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 ||||| |||||||| |||| ||| ||| ||| | || ||||||||||| Sbjct 18428 TGGGCTCCAACAACATCAACTGCCTGGAGCCCTCCGGAAACTTCGGTTCTCGTCT 18374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027779408805078