Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colletotrichum_20falcatum_20[genbank_20GCA_5F001484525.1_202016-01-
04] 4,358 sequences; 48,186,431 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3337 116 8e-21
seq1679 98.7 2e-15
seq2522 96.9 7e-15
seq1992 87.8 4e-12
seq3441 86.0 1e-11
>seq3337
Length=46210
Score = 116 bits (128), Expect = 8e-21
Identities = 270/405 (67%), Gaps = 8/405 (2%)
Strand=Plus/Plus
Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583
||||| ||||| | ||| || || | ||||| |||||||| || | ||||||
Sbjct 4079 TTCATGACACCAGCCTTTTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 4138
Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643
|||| ||||| ||||||||||||||||||||| | | ||||| ||| | |
Sbjct 4139 CCCAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGAAGACTTGTAGACCTTTTCGTTG 4198
Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703
||||| || || | || ||||| || || ||||| | ||||| |||||| | |||
Sbjct 4199 CCAAGCGCAACAAGGAGACGGTCGGCAACGAACTCAATGTACTGCTTCATCAGGTTGGAG 4258
Query 251704 TTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763
|||||||| | || ||||||| ||||| | ||| |||| || | ||
Sbjct 4259 TTCATGCCGAGCAGGGCGCAAGGAAGAGCCTCCGTCAGGAACTCCTGCTCAATCTTGACA 4318
Query 251764 GCCTCCTCCACAATTGCCT---TCACCTG-TGCCAGAGACAGCTTGTTCTCCAGCTTTGA 251819
|| || | | || ||| | ||||| | | | | | ||||| || | ||
Sbjct 4319 GCATCGACAATGATGTCCTCGATAACCTGCTTGCTGGGGC----GGTTCTTGAGGTGGGA 4374
Query 251820 GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879
|||| ||| | | || | ||||||||||||||| ||| ||||| |||||||||
Sbjct 4375 ATACAAGAGACAGGCGAAGTCGGTGTGCAGACCCTCGTCACGAGAGATGAGCTCGTTGGA 4434
Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGAT 251924
| ||| || ||||| | ||||| ||| |||||||||||||
Sbjct 4435 GAAGGTCAGACCCGGCATGAGACCACGCTTCTTGAGCCAGAAGAT 4479
>seq1679
Length=87701
Score = 98.7 bits (108), Expect = 2e-15
Identities = 141/198 (71%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755
|| || |||||||| ||||| ||||||||||| |||| | |||| ||||| || |
Sbjct 81185 GTCGGCTCTCTGTCTGGTGGATGGAAGATGAAATTGGCTTTGGCTCGTGCCATGCTCAAG 81244
Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815
| ||||| || || ||||||||||| || || |||||| ||||| ||||| | |||
Sbjct 81245 GGCGCCGACGTTCTGCTGCTTGATGAACCTACTAACCACCTGGACGTTGCCAACATTGCC 81304
Query 279816 TGGCTAGTGTCCTACCTAA----CCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871
||||| | | ||||||| | ||| | || | || | | | || || || ||
Sbjct 81305 TGGCTCGAGACCTACCTCAAGACCCACCCCGA----TATTACCAGCTTAATCGTTTCCCA 81360
Query 279872 CGACTCTGGCTTCCTAGA 279889
||||||||| ||||| ||
Sbjct 81361 CGACTCTGGTTTCCTCGA 81378
>seq2522
Length=51109
Score = 96.9 bits (106), Expect = 7e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|||||||| || || |||| ||||| || || || |||| ||||||||||| |||
Sbjct 15383 GGTGAGGACCTTTGCAACTGCACCTTCTCCCTTGCCTACGGTGCCAAGATTCTGCTCAAC 15324
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | ||| ||||||||||| | || || ||||| ||| ||||| || |
Sbjct 15323 CAGACTCACCTTCGTCTCAAGCGTGGCCAGCGCTACGGTCTTTGCGGCCCCAACGGTTCC 15264
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 15263 GGCAAGTCCACCCTCATGCGCGCCATCAACAACGAGCAGGTCG-AGGGTTTCCCCAAGCA 15205
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|| ||||| | ||| || | || ||||||||| | |||||
Sbjct 15204 GTCCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTC 15163
Score = 87.8 bits (96), Expect = 4e-12
Identities = 93/120 (78%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 280704 CACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GC 280762
||||| ||||| |||||||| || || || ||| ||||| | ||| | | || ||
Sbjct 13979 CACTCCCGCATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTCGTCCTTGCCGCCTGC 13920
Query 280763 TCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
||| ||||| | ||||||| ||||||| ||||||||||| |||||||| || ||||| ||
Sbjct 13919 TCT-TGGCAGCGCCCTCACTTGATCGTACTCGACGAGCCCACCAACTACCTCGACCGTGA 13861
>seq1992
Length=43275
Score = 87.8 bits (96), Expect = 4e-12
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| ||||||| ||||||||||| ||||||||||||| ||| |||||||||| |
Sbjct 14030 GCCCGGCTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGTGGGTTCGACC 13971
Query 142564 CCCACATCGGGCAGAAGTCGCCGTC 142588
||||| |||||| || || |||||
Sbjct 13970 CCCACGTCGGGCTCAATTC-CCGTC 13947
>seq3441
Length=28323
Score = 86.0 bits (94), Expect = 1e-11
Identities = 197/295 (67%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
|||||| || ||||||||||||| || ||||| | |||| ||| || || ||
Sbjct 18666 GACTTCGTCAACAAGGAGCTCATCCTCTTCTCCATGGCTGATAACATGCGATCCATCCCG 18607
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
||| || ||||| || ||||| ||||| ||| | ||| |||| |||||| ||
Sbjct 18606 TCCGTCGTCGATGGGCTGAAGCCCGGCCAGCGCAAGGTTATCTATGCCTGCTTCAAGAGG 18547
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
|||||||| | || ||||| | | | || | ||||| | ||||| | |
Sbjct 18546 AACCTGGTCAAGGATCAGAAGGTTGTTGAATTAGCCGGTTACATTTCCGAGCAGACGTCC 18487
Query 218698 TACCATCACGGTGAGCAGAGT--CTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755
||||| ||||| || || | || ||| |||| | ||| | || ||| ||| ||
Sbjct 18486 TACCACCACGGCGA--AGTCTCCCTTCAGCAGACCATCATTGGCCTTGCCCAGAACTTTG 18429
Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810
||||| |||||||| |||| ||| ||| ||| | || |||||||||||
Sbjct 18428 TGGGCTCCAACAACATCAACTGCCTGGAGCCCTCCGGAAACTTCGGTTCTCGTCT 18374
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027779408805078
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |